Nocardiopsis exhalans: NE857_05210
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Entry
NE857_05210 CDS
T08285
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
nex
Nocardiopsis exhalans
Pathway
nex03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nex00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NE857_05210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nex03021
]
NE857_05210
03400 DNA repair and recombination proteins [BR:
nex03400
]
NE857_05210
Enzymes [BR:
nex01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NE857_05210
Transcription machinery [BR:
nex03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NE857_05210
DNA repair and recombination proteins [BR:
nex03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NE857_05210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPN1_C
Motif
Other DBs
NCBI-ProteinID:
USY21041
UniProt:
A0ABY5DD82
LinkDB
All DBs
Position
1158548..1162426
Genome browser
AA seq
1292 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYMVTWVDTEARERDLQSLEARISVEKQHLEQRRDSTIEERHRKLEAD
LAELEEQGAKGDARRKVREGAEREMRQLRDRAQREIDRLDEVWSRFKNLKVQDLEGDEML
YREMRDRFGKYFRGGMGAQAIQDRLSNFELDEEAEKLRETIRTGKGQKKARALKRLKVVS
AFLNTTNSPMGMVLDCIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERSR
PVVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARLLMLATNNILKPSDGKPVTMPTQDMIIGLYYLTTERVGAAGEGR
AFRSPAEAIMAYDLGALDLQAKIRLRIADGAPAPKDWTPPEGWEPGDVYVLETTLGRYLF
NEATPVDYPYVNFQVGKKQVSVLVNDLAENYPKVQVATTLDALKDAGYRWATRSGLTIGI
EDVVAPPRKAEILGGYDRKADKIQREYDRGLITDDERRQELTEVWTQATAEVAKDMEDNF
PADNPVWMMVQSGARGNPMQVRQIAGIRGLVSNTKGETIPRPIKSSYREGLSVLEYFIST
HGQRKGLADTALRTADSGYLTRRLVDVAQDVIVREIDCGTDRSLWHEIGEKNAAGVVVRK
HNVENTGFGRTIAEDTLDPEGNLVLPALSDTSEQNIDKLVAHGVTRVRIRSSLTCEAKIG
VCTTCYGRSMATGKPVDVGEAIGIIAAQSIGEPGTQLTMRTFHMGGSAGQDITHGLPRVQ
ELFEARVPKGMAPISEMEGRIRIDDTEKSRKIVVIPDDGTDEIAYPVPMRAQLLVSDGDH
VKVGQQLIQGAINPHEVLRIQGPRAVQQHLVSEVQDVYKSQGVSIHDKHIEIIVRQMLKR
VNILESGDTELLPGEMVERPKFERINRRVVSEGGQPAAGRPVLLGITKASLATESWLSAA
SFQETTRVLTENAIHGKSDPLLGLKENVIIGKLIPAGTGIPQYRNIRVEPTEEAKASMYS
VSGYEEPSEYTFGQGSGEAVPLEEYDFGPYNR
NT seq
3879 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgacgagctgcggattggcctcgccaccgccgacgacatt
cgccagtggtcacacggcgaggtcaagaagcccgaaaccatcaactaccgaaccctcaag
cccgagaaggacggactcttctgcgagaagatcttcggtccgacccgggactgggagtgc
tactgcggtaagtacaagcgcgtccgcttcaagggcatcatctgtgagcgctgcggcgtc
gaggtgacccgtgccaaggtgcgccgtgagcggatgggccacattgagctggccgctccc
gtcacgcacatctggtacttcaagggcgtgccctcccgtctgggctacctgctggacctg
gcgccgaaggatctcgagaagatcatctacttcgccgcctacatggtcacgtgggtggac
accgaggcgcgtgagcgcgacctgcagtcgctcgaggcacggatctcggtcgagaagcag
cacctggagcagcgccgcgactccaccatcgaggagcgccaccgcaagctcgaggccgac
ctggccgagctcgaggagcagggtgccaagggcgacgcccgtcgcaaggtgcgcgagggc
gccgagcgcgagatgcgccagctgcgcgaccgcgcccagcgcgagatcgaccgcctcgac
gaggtgtggagccgtttcaagaacctcaaggtccaggacctcgagggcgacgagatgctc
taccgcgagatgcgcgaccgcttcgggaagtacttccgcggcggcatgggcgcccaggcc
atccaggaccgcctgtccaacttcgagctggacgaggaggcggagaagctccgggagacc
atccgcaccggcaagggccagaagaaggcccgcgccctgaagcggctcaaggtcgtctcg
gcgttcctcaacaccaccaacagccccatgggcatggtgctggactgcatcccggtcatc
ccgccggaccttcgtccgatggtgcagctggacggtggccgcttcgcgacctccgacctc
aacgacctgtaccgtcgcgtcatcaaccggaacaaccgcctcaagcggctgctggacctc
ggcgcgcccgagatcatcgtcaacaacgagaagcggatgctgcaggaggccgtcgacgcg
ctgttcgacaacggccgccgcggtcgcccggtcaccggtcccggtaaccgtccgctcaag
tcgctgtccgacatgctcaagggcaagcagggtcgtttccgtcagaacctgctcggcaag
cgagtcgactactccggccgttcggtcatcgtcgtcggcccgcagctgaagctgcaccag
tgcggtctgcccaagcagatggccctggagctcttcaagccgttcgtgatgaagcgcctg
gtcgacctgaaccacgcgcagaacatcaagagcgccaagcgcatggtggagcggtcccgc
cccgtcgtgtgggacgtcctcgaagaggtcatcaccgagcacccggttctgctgaaccgt
gctcccacgctgcaccgtctgggtatccaggccttcgagccgcagctggtcgagggcaag
gccatccagatccacccgctcgtgtgcaccgcgttcaacgcggacttcgacggtgaccag
atggccgtccaccttccgctgtccgccgaggcccaggccgaggcgcgactgctgatgctg
gcgaccaacaacatcctcaagccgtccgacggcaagcccgtgaccatgcccacccaggac
atgatcatcggtctgtactacctgacgacggaacgcgtcggcgccgccggcgagggccgt
gccttccgctccccggccgaggccatcatggcctacgacctgggcgccctggacctgcag
gccaagatccggctgcgtatcgccgacggcgctcccgcgcccaaggactggacgccgccg
gagggctgggagccgggtgacgtctacgtcctggagaccactctgggccggtacctcttc
aacgaggccaccccggtggactacccgtacgtcaacttccaggtgggcaagaagcaggtc
tcggtcctggtcaacgacctcgccgagaactaccccaaggtccaggtcgccacgaccctg
gacgccctgaaggacgccggttaccgctgggccacccggtccggtctgaccatcggtatc
gaggacgtcgtcgcgcctccgcgcaaggccgagatcctcggtggctacgaccgcaaggcc
gacaagatccagcgggagtacgaccgcggtctgatcaccgacgacgagcgccgccaggag
ctcaccgaggtgtggacccaggccacggccgaggtcgccaaggacatggaggacaacttc
cccgccgacaacccggtgtggatgatggtccagtccggtgcgcgtggtaacccgatgcag
gtgcgccagatcgccggtatccgtggtctggtctccaacaccaagggtgagacgatcccg
cgtccgatcaagtcctcctaccgtgagggcctgtccgtgctggagtacttcatctccacg
cacggtcagcgcaagggtctggccgacaccgccctgcgtaccgccgactcgggttacctg
acccgtcgtctggtggacgtcgcgcaggacgtcatcgtccgtgagatcgactgcggcacc
gaccgttcgctctggcacgagatcggcgagaagaacgccgccggtgtcgtcgtgcgcaag
cacaacgtcgagaacaccggtttcggccggaccatcgccgaggacacgctggaccccgag
ggcaacctcgtgctcccggccctgtccgacacctccgagcagaacatcgacaagctggtc
gcccacggggtcacccgcgtgcgcatccgctcgtcgctgacctgtgaggcgaagatcggc
gtctgcaccacctgctacggccgctccatggcgaccggcaagccggtggacgtcggtgag
gcgatcggtatcatcgcggcccagtccatcggtgagcccggtacccagctgaccatgcgt
accttccacatgggtggttcggccggtcaggacatcacgcacggtctgccccgtgtccag
gagctcttcgaggcccgtgtcccgaagggtatggccccgatctccgagatggagggccgg
atccggatcgacgacaccgagaagagccgcaagatcgtcgtcattcccgacgacggcacg
gacgagatcgcctacccggtcccgatgcgtgcgcagctcctggtgagcgacggcgaccac
gtcaaggtcggccagcagctcatccagggtgcgatcaacccgcacgaggtgcttcgcatc
cagggtccgcgcgcggtgcagcagcacctcgtgtcggaggtccaggacgtgtacaagtcg
cagggtgtgtccatccacgacaagcacatcgagatcatcgtccgccagatgctcaagcga
gtgaacatcctggagtcgggcgacaccgagcttctgcccggtgagatggtcgagcgtccg
aagttcgagcggatcaaccgacgcgtcgtgtccgaaggcggccagccggccgccggacgt
ccggtgctgctgggtatcaccaaggcctcgctggccacggagtcctggctgtcggcggcc
tccttccaggagaccacccgcgtgctgaccgagaacgcgatccacggcaagagcgacccg
ctgctcggcctcaaggagaacgtcatcatcggtaagctcatcccggccggtaccggtatt
ccgcagtaccgcaacatccgggtggagccgaccgaggaggccaaggcctcgatgtactcg
gtctccggttacgaggagccgagcgagtacaccttcggtcagggatcgggcgaggccgtt
ccgctggaggagtacgacttcgggccgtacaaccggtaa
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integrated database retrieval system
