Nocardiopsis exhalans: NE857_07490
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Entry
NE857_07490 CDS
T08285
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
nex
Nocardiopsis exhalans
Brite
KEGG Orthology (KO) [BR:
nex00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
NE857_07490 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nex03400
]
NE857_07490 (ligD)
Enzymes [BR:
nex01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NE857_07490 (ligD)
DNA repair and recombination proteins [BR:
nex03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
NE857_07490 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
USY21445
LinkDB
All DBs
Position
1682647..1683564
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AA seq
305 aa
AA seq
DB search
MRTTVRAGRRKVEVRHADKSLFGPGGATKADLADYYARIAPLMLPLVRGRPVALERYVEG
IGSPGFLVQHPSHPKWIRTVWTSSGRMMECQEAAALVWCADQDAITLHTWSSRTPRLGLP
DRMVLDLDPVDSGEDSFDSCRDAAWNVREVLGELGLAAYVMTTGSRGLHIHSPLRPEVDD
QDVRRLAKAVADRVAARAPDEWTTRVRKAARHGRMFVDYLRNGPAQLAVAPYSVRARPGA
PVATPVTWEELDQLTSSQDFGIGLERDECPFAGMRRHARSPRRALSLLDDREGGVVPQPR
PEKGK
NT seq
918 nt
NT seq
+upstream
nt +downstream
nt
atgcggacgacggtgcgggcggggcggcgcaaggtggaggtcaggcacgccgacaagtcc
ctcttcgggcccggcggggcgaccaaggccgatctggccgactactacgcgaggatcgcg
cccctgatgctgccgctggtccgggggcgtccggtggcactggagcgctacgtggagggc
atcggctccccggggttcctggtccagcacccgtcgcaccccaagtggatccgcacggtg
tggacctcctcgggacggatgatggagtgccaggaggcggccgccctggtgtggtgcgct
gaccaggacgccatcaccctgcacacctggtcctcgcgcaccccgcgcctggggctgccg
gaccggatggtgctggacctggacccggtggactcgggggaggactccttcgactcctgc
cgtgacgcggcctggaacgtacgcgaggtcctgggcgagctcggcctggccgcgtacgtg
atgaccaccggttcccgcggcctgcacatccactcgccgctccgaccggaggtggacgac
caggacgtgcgaaggctcgccaaggccgtcgccgaccgcgtggccgcccgcgcccccgac
gagtggaccacccgagtgcgcaaggccgcccgccacggccgaatgttcgtggactacctg
cgcaacggccccgcccaactcgctgtcgcgccctactcggtccgagccagacccggagcc
ccggtggccaccccggtgacctgggaggaactggaccagctcacctcctcccaggacttc
ggcatcggcctggaacgggacgagtgcccgttcgccggaatgcgcagacacgccagatcc
ccgcgccgcgcgctctctctcctggacgacagagagggcggcgtggtcccccaaccccgc
cccgagaaggggaagtag
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