Nocardiopsis exhalans: NE857_08785
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Entry
NE857_08785 CDS
T08285
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
nex
Nocardiopsis exhalans
Brite
KEGG Orthology (KO) [BR:
nex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nex03019
]
NE857_08785 (hrpA)
Enzymes [BR:
nex01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
NE857_08785 (hrpA)
Messenger RNA biogenesis [BR:
nex03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
NE857_08785 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
HA2_N
NACHT
nSTAND3
T2SSE
ABC_tran
SLFN-g3_helicase
AAA_30
ResIII
PhoH
TsaE
AAA_23
Motif
Other DBs
NCBI-ProteinID:
USY21679
LinkDB
All DBs
Position
1981274..1985287
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AA seq
1337 aa
AA seq
DB search
MSTTTPAPAADQLRSRLRDLMPADRHRLRRRIDGLARIRDERRRASVTTQIAGDIDRAEL
RVGLRREAVPELSYPEELPVSARREDIAEAIRDNQVVIVAGETGSGKTTQLPKICLELGR
GVMGTVGHTQPRRLAARTVAERIADEIGTPLGETVGYKVRFTDSSNDSTLVKLMTDGILL
AEIQHDRMLRQYDTLIIDEAHERSLNIDFLLGYIKQLLPKRPDLKIIITSATIDPERFSR
HFDDAPIVEVSGRTYPVEVRYRPISDEILDPEEKNSGPGTDKDQTQAILDAVDELSTEDP
GDILVFLSGEREIRDTAEALEKKKIRGLEVLPLYARLSVAEQKRVWSRHSGRRVVLATNV
AETSLTVPGIKYVIDPGTARISRYSHRTKVQRLPIEAVSQASANQRKGRCGRVSEGICIR
LYSEEDFLSRPEYTDPEILRTNLASVILQMAHLGLGDVAAFPFVDGPDHRQIKDGVNLLA
ELGALQPEAARTKTSKGDGDTDGKQGSDRQGSKQRRLTPIGRRLAQLPIDPRLGRMVLEA
EKRDCLAEVMVITSALSIQDPRERPTEKQQQAQQAHARFTDKESDFLAFLNLWNHLRDKQ
QELSGNQFRRMCREEFLNYLRVREWQDIHGQLKQVLRTMDIEVPPLREQAADPRDVHMSL
LAGLLSHVGLKDPDKHEYLGGRGARFAIFPGSALFKKQPRFVMVGELVETSKLWGRMVAK
IEPEWAEELGVDIVKRSYSEPHWERKRGAVMAFERVTLYGVPIVVQRKVSYGRIDPELSR
ELFIRRALVEGDWETRHQFFHDNRKLLDEVEDLEHRARRRDIVVDDNTLFDFYDRRVADS
AISAAHFDSWWKKARRDEPELLDFTREELINDGVDMVSEDDYPDVWRQGAFVFPLTYQFE
PGSDSDGVTAHIPVKFLNQVENTGFDWQIPGLRNELITALIRSLPKPLRRHFVPVPDNAA
RARGGLTPYEGSLTEALAAELTVMAYGERIRAEDFQLDRVPDHLRITFRALDERKRTLAE
SKDLEQLRAKLKPRLREAIATEAKGVEKKGITSWDFGPLEQTLERKALGPKVKGYPALLD
EGESVAIRIFDTRPEQRAAMRAGTRRLLMLNIPSPATVVSKGLNNPDKLALADNPHGSIR
KMLQDAEAAAVDHLLTREGGPVWNGEDFAKLTDRVRADLGDTLAEILGKTARILVLWRKI
SKKTKGTTSLAVLPSLNDIQGQLGDLVGDGFVTRAGLSRLDDVHRYLRGIEYRLAKLPEN
PRRDQVNMSKVEQMRQAVAKVRGVLPAGRTDDPDVVELRWMLEEYRVSLFAQELRTAYPV
SDKRIMKALEAVKKPGK
NT seq
4014 nt
NT seq
+upstream
nt +downstream
nt
atgagcaccaccacgcccgcgcccgccgcggaccaactccgttcccggctgcgcgacctc
atgcccgcggaccggcaccggctccgtcgtcgtatcgacggcctggccaggatccgtgac
gagcgccgccgcgcctccgtgaccacgcagattgcgggcgacatcgaccgcgccgagctc
cgtgtgggcctgcgccgcgaggccgtgcccgagctcagctaccccgaagagctcccggtc
agcgccaggcgcgaggacatcgccgaggccatccgggacaaccaggtcgtcatcgtcgcc
ggtgagaccggttccggcaagaccacccagctgcccaagatctgcctggagctggggcgc
ggcgtcatgggcacggtcgggcacacccagccccgccggctggccgcccgcacggtcgcc
gagcgcatcgccgacgagatcggcacccccctgggcgagacggtcggctacaaggtccgg
ttcaccgactcctccaacgacagcacgctggtcaagctgatgaccgacggcatcctgctg
gccgagatccagcacgaccgcatgctgcgccagtacgacacgctcatcatcgacgaggcg
cacgagcgcagcctcaacatcgacttcctgctcggctacatcaagcagctcctgcccaag
cggccggatctgaagatcatcatcacctcggcgaccatcgaccccgagcggttctcccgc
cacttcgacgacgcccccatcgtcgaggtctccgggcgcacctacccggtcgaggtccgc
taccggccgatctcggacgagattctcgacccggaggagaagaattcgggtccagggacc
gacaaggaccagacccaggcgatcctggacgccgtcgacgagctctccaccgaggacccc
ggcgacatcctggtcttcctcagcggcgaacgcgagatccgcgacaccgccgaggccctc
gaaaagaagaagatccgcggcctggaggtcctgcccctctacgcccgcctgtccgtggcc
gagcagaaacgcgtctggtcccggcacagcggccgccgtgtcgtgctggccaccaacgtc
gccgagacctcgctgacggtccccggcatcaagtacgtcatcgaccccggcaccgcgcgc
atctcccggtactcccaccgcaccaaggtgcagcgcctgcccatcgaggcggtctcgcag
gcctccgccaaccagcgcaagggccgctgcggccgtgtgtccgagggcatctgtatccgc
ctgtactccgaggaggacttcctctcccgcccggagtacaccgaccccgagatcctgcgc
accaacctcgcctcggtcatcctccagatggcccacctgggcctgggcgacgtcgccgcc
ttcccgttcgtggacggtcccgaccaccgccagatcaaggacggcgtcaacctgctggcc
gaactcggcgcgctccagcccgaggccgcccggaccaagacgtccaagggggacggggac
accgacggcaagcagggttcggaccggcagggttcgaagcagcgccgcctgaccccgatc
ggccgccgcctcgcccagctgcccatcgacccccgcctgggccgcatggtcctggaggcc
gagaaacgcgactgcctggccgaggtcatggtcatcacctcggccctgtccatccaggac
ccgcgcgagcgccccacggagaagcagcagcaggcccagcaggcgcacgcccggttcacc
gacaaggaatcggacttcctggcgttcctcaacctgtggaaccacctgcgcgacaagcag
caggagctgtccggcaaccagttccgccggatgtgccgcgaggagttcctcaactacctg
cgcgtacgcgagtggcaggacatccacggccagctcaagcaggtgctgcgcacgatggac
atcgaggtcccgccgctgcgtgagcaggccgccgacccgcgcgacgtgcacatgtcgctg
ctggccgggctgctctcgcacgtgggcctcaaggacccggacaagcacgagtacctgggc
ggccgcggggcgcgcttcgcgatcttccccggctccgccctgttcaagaagcagccccgc
ttcgtgatggtcggcgaactcgtcgagacctccaagctctggggccgcatggtcgccaag
atcgagcccgagtgggccgaggagctcggcgtcgacatcgtcaagcgcagctacagcgaa
ccgcactgggagcgcaagcgcggcgccgtcatggccttcgaacgcgtcaccctgtacggg
gtgccgatcgtcgtgcagcgcaaggtgtcctacggaaggatcgaccccgaactctcccgc
gagctgttcatccgccgcgccctggtggagggcgactgggagacccggcaccagttcttc
cacgacaaccgcaagctcctcgacgaggtcgaggacctggagcaccgtgcccgccgccgc
gacatcgtcgtggacgacaacacgctcttcgacttctacgaccgccgcgtcgccgactcc
gcgatctccgccgcccacttcgactcctggtggaagaaggcccgccgcgatgagcccgag
ctgctcgacttcacccgcgaggagctcatcaacgacggcgtggacatggtcagcgaggac
gactacccggacgtgtggcgtcagggcgcgttcgtcttcccgctgacctaccagttcgag
ccgggcagcgactccgacggcgtcaccgcgcacatcccggtgaagttcctcaaccaggtc
gagaacaccggcttcgactggcagatccccggcctgcgcaacgaactcatcaccgcgctg
atccgttcgctgcccaagccgctgcgccgccacttcgtgcccgtccccgacaacgcggcc
cgcgcccggggcggcctgacaccctacgagggctccctcaccgaggccctggcggccgaa
ctcaccgtgatggcctacggcgagcgcatccgcgccgaggacttccagctcgaccgggtc
cccgaccatctgcgcatcaccttccgcgcactggacgagcgcaagcgcaccctggccgag
tccaaggacctcgaacagctgcgcgccaaactcaaaccccggctgcgcgaggcgatcgcc
accgaggccaagggcgtggagaagaagggcatcacctcctgggacttcggtccgctggag
cagaccctggaacgcaaggccctgggcccgaaggtcaagggctacccggccctgctggac
gagggcgagagcgtcgccatccgcatcttcgacacccggcccgaacagcgcgccgccatg
cgcgcgggcacccggcggctgctcatgctgaacatcccgtccccggcgacggtggtcagc
aagggcctgaacaacccggacaagctcgccctggcggacaacccgcacggctccatccgc
aagatgctccaggacgccgaggcggccgccgtcgaccacctgctgacccgcgagggcggc
ccggtgtggaacggcgaggacttcgccaagctcaccgaccgggtccgcgccgacctcggc
gacaccctcgccgagatcctggggaagacggcccgcatcctcgtgctgtggcgcaagatc
tccaagaagaccaagggcaccacctccctggcggtcctgccgtccctcaacgacatccag
ggccagctcggcgacctcgtcggcgacggcttcgtcacccgcgccgggctctcccgactg
gacgacgtgcaccgctacctgcgcggcatcgagtaccgactggccaaactcccggagaac
ccgcgccgcgaccaggtcaacatgtccaaggtcgaacagatgcgccaggccgtcgccaag
gtcaggggtgtgttgcccgctggccgcaccgacgacccggacgtggtcgaactgcgctgg
atgctggaggagtaccgggtgagcctcttcgcccaggagctccgcaccgcctacccggtc
tccgacaaacgcatcatgaaggccctggaggccgtcaagaagcccgggaagtaa
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