Nocardiopsis exhalans: NE857_11660
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Entry
NE857_11660 CDS
T08285
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
nex
Nocardiopsis exhalans
Pathway
nex03030
DNA replication
nex03430
Mismatch repair
nex03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nex00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NE857_11660 (dnaE)
03430 Mismatch repair
NE857_11660 (dnaE)
03440 Homologous recombination
NE857_11660 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nex03032
]
NE857_11660 (dnaE)
03400 DNA repair and recombination proteins [BR:
nex03400
]
NE857_11660 (dnaE)
Enzymes [BR:
nex01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NE857_11660 (dnaE)
DNA replication proteins [BR:
nex03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NE857_11660 (dnaE)
DNA repair and recombination proteins [BR:
nex03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NE857_11660 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
MCM10_OB
Motif
Other DBs
NCBI-ProteinID:
USY22201
LinkDB
All DBs
Position
2607316..2610876
Genome browser
AA seq
1186 aa
AA seq
DB search
MADSFAHLHVHTEYSMLDGAAKLKPLFKEAARLQMPAVAMTDHGNMFGAYEFFQQSRGSG
VKPIIGIEAYVAPESRFHKKRVFWGRSNTSDDASAEGGKDISGGGRYLHMTMLAQNAQGL
RNLFRMSSLASSEGYYMKPRMDLELMQQYNEGVIVSTGCPSGGVQTRLRLGQEKEAIEYA
AGLQDIFGKENVFLELMDHGVPIEKEVRDGLLKVGRELSIPPLVTNDSHYVYESQAAAHD
ALLAVGVGKNLDDPTRFRFNGSGYYLKTADEMRGLLNFEEWEQGCKNTLLIAERIAPDAY
NEVFAHRDLMPEFPIPEGETQASWLAKEVERLLPTRYPDGTSDEVRRRVEFELGIINEMG
FPAYFLVTADICQYARKAGIALGPGRGSAAGSMIAYVLGITDLDPLEHGLLFERFLNPER
VSMPDVDLDFDERRRGEMIEYVTRLYGEERVAQILTFGTIKAKAAVKDSARILGMPYSVG
DQITKAFPAAVGGKEIPLDAVFNTENERYGETTELRNLVDNDPQVNKVMETARGIEGLTR
GTGVHAAGVILSKEPLLDVIPLHKRDSDGAIITGFPYPQCEEMGLLKMDFLGLRNLTIMD
DAVKSIKEAEGTDIDLAKLPLDDKKTYQLLSRGDTLGVFQLDGGAMRNLLKRMEPKKFGD
IAAVLSLYRPGPMAANAHNDYADRSNGRQEVTPIHPDLKDALEPILGETFHLLVYQEQIM
AIAQQLAGYTLGGADLMRRAMGKKKKEALEEEEAKFFPGAKKRGFSHEAIQALWDVMLPF
AGYAFNKSHAAGYALVSYWTAYLKANYPAAYMAALLTSVSDDKDKMAVYLAECRTQGIKV
LPPDVNESGLRFTPVGKDIRFGMGAVRNVGANVVNSIVKTRTEKGNYTSFTDFLSKIELA
ACNKRVIESLIKAGGFDSLGQPRRELYRHHETAVEGMISSKKQEAHGQFDLFGGGDDDSD
STPIGLNIQWGDEEWDRKTKLAFEREMLGLYVSSHPLAGAERVLARSRDTSIAQIVAGDL
ARERGEVRIAGLISKVDKRTNKAGNQWAIATVEDLDASMEVLFFPKTYPLYVDALLEDTA
VTVKGRLNDRDGTYSMFTSEMSILDISHITEGEPPVLLSVAEERLNPELVDDLRQVLSSH
KGDTPVRIRVDNPVRSRIYAVDYSVRISPEFNGEMKSLLGAYAVDY
NT seq
3561 nt
NT seq
+upstream
nt +downstream
nt
atggccgactccttcgctcatctgcacgtccacaccgagtactcgatgctcgacggggcg
gcgaagttgaagcccttgttcaaggaggcggcacggctgcagatgccggccgtggccatg
accgaccacggcaacatgttcggggcctacgagttcttccagcagtccaggggctcgggt
gtgaagcccatcatcgggatcgaggcgtatgtcgcgccggagtcgcgcttccacaagaag
cgggtcttctgggggcgttcgaacacgtcggacgacgcctcggccgagggcggcaaggac
atctccggtggcggtcgctacctgcacatgacgatgctcgcccagaacgcgcagggactg
cggaacctcttccggatgtcttctctggcttcgtccgagggctactacatgaagccccgg
atggacctggagctcatgcagcagtacaacgagggcgtcatcgtctccaccggttgcccc
tccggcggcgtgcagacgcgtctgcgcctgggccaggaaaaggaggcgatcgagtacgcc
gcggggctccaggacatcttcggcaaggagaacgtcttcctggagctgatggaccacggt
gtgccgatcgagaaggaggtccgtgacggactgctcaaggtcggccgggagctgagcatt
ccgccgctggtcaccaacgactcgcactacgtgtacgagtcgcaggccgcggcgcacgat
gctctgttggccgtgggtgtcggtaagaacctggacgaccccacccggttccggttcaac
ggttcgggctactacctcaagaccgcggacgagatgcgcgggctgctcaacttcgaggag
tgggagcagggctgtaagaacaccctgctcatcgcggagcggatcgcgcccgatgcctac
aacgaggtcttcgcgcaccgggacctgatgccggagttccccattccggagggggagaca
caggcctcctggctggccaaggaggtcgagcggctgctgccgacgcggtacccggacggg
acgagtgacgaggtccgccggcgggtggagttcgagctcggcatcatcaacgagatgggt
tttcccgcctacttcctcgtgaccgccgacatctgccagtacgcgcgcaaggcgggtatc
gcgctgggcccgggccgtggttcggcggcgggctcgatgatcgcctacgtcctgggcatc
accgacctggacccgctggagcacggtctgctgttcgagcggttcctcaaccccgaacgt
gtgtccatgcccgatgtcgacctcgacttcgacgagcgtaggcgcggcgagatgatcgag
tacgtcacccgcctgtacggcgaggagcgggtggcgcagatcctcaccttcggcaccatc
aaggccaaggctgcggtaaaggactcggcgcgaattctgggcatgccgtactcggtcggc
gaccagatcaccaaggccttccccgcggcggtcggcggtaaggagatcccgctcgacgcg
gtgttcaacaccgagaacgagcgctacggcgagaccaccgagctgcgcaacctggtcgac
aacgacccccaggtcaacaaggtcatggagaccgcgcgcggtatcgagggcctgacccgc
ggcaccggtgtgcacgccgcgggcgtcatcctgtccaaggaacccctgctcgacgtcatc
ccgctgcacaagcgtgactccgacggcgcgatcatcaccggctttccctatcctcagtgc
gaggagatgggtctgctcaagatggacttcctgggcctgcgcaacctgacgatcatggat
gatgcggtcaagagcatcaaggaggccgaggggaccgacatcgatctcgcgaagctcccc
ctggatgacaagaagacctaccagctgctctcccggggcgacaccctgggcgtgttccag
ctggacggcggcgcgatgcgcaacctgctcaagcggatggagccgaagaagttcggtgac
atcgcggccgtcctgtcgctgtaccgccccggtccgatggcggccaacgcgcacaacgac
tacgccgaccgctcgaacggccgccaggaagtgaccccgatccacccggatctcaaggac
gcccttgagccgatcctcggggagaccttccacctgctcgtctaccaggagcagatcatg
gccatcgcccagcagctggccggatacacgctgggcggcgccgacctgatgcggcgcgcg
atgggcaagaagaagaaggaggccctggaagaggaggaggccaagttcttccccggcgcg
aagaagcgcggtttctcccacgaggccatccaggccctgtgggacgtcatgctcccgttc
gcgggctacgcgttcaacaagtcgcacgccgcgggctacgcgctggtctcctactggacc
gcctacctcaaggccaactacccggccgcctacatggccgcgctgctgacctcggtcagt
gacgacaaggacaagatggcggtctacctggccgagtgccggacccagggaatcaaggtg
ctgccgcccgacgtcaacgagtccggtctgcgcttcaccccggtcggcaaggacatccgc
ttcggtatgggcgcggtgcgcaacgtcggcgccaacgtggtgaactcgatcgtcaagacc
cgcacggagaagggcaactacacctccttcaccgacttcctctccaagatcgagttggcc
gcctgcaacaagcgggtgatcgagtcgctgatcaaggctggcgggttcgactcgctgggc
cagccccggcgggagctctaccgccaccacgagaccgcggtcgagggcatgatcagctcg
aagaagcaggaggcccacggccagttcgacctgttcggcggcggggacgacgacagcgac
tccactcccatcgggctgaacatccagtggggtgacgaggagtgggaccgcaagaccaaa
ctggccttcgaacgggagatgctggggctgtacgtgtccagtcacccgctggccggcgcc
gagcgggtgctggcccgttccagggacacctcgatcgcgcagatcgtcgccggtgacctg
gcccgcgagcgcggggaggtgcgcatcgccggcctgatctccaaggtcgacaagcgcacc
aacaaggcgggcaaccagtgggccatcgccacggtggaggacctggacgcctccatggag
gtgctgttctttcccaagacctatccgctgtacgtggacgccctgttggaggacaccgcg
gtcacggtcaagggccggctcaacgaccgggacggcacgtactcgatgttcacgtcggag
atgtcgatcctggacatctcgcacatcaccgagggcgagccgccggtgctgctctcggtg
gcggaggagcgcctgaaccccgagctcgtcgacgacctgcgccaggtgctgagctcgcac
aagggtgacaccccggtgcggatccgggtggacaacccggtgcgctcccggatctacgcg
gtggactactcggtgcggatctcgccggagttcaacggtgagatgaagagcctgctgggg
gcgtacgcggtcgactactga
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