Nocardiopsis exhalans: NE857_24940
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Entry
NE857_24940 CDS
T08285
Name
(GenBank) DEAD/DEAH box helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
nex
Nocardiopsis exhalans
Pathway
nex03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nex00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NE857_24940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nex03019
]
NE857_24940
03400 DNA repair and recombination proteins [BR:
nex03400
]
NE857_24940
Enzymes [BR:
nex01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NE857_24940
Messenger RNA biogenesis [BR:
nex03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NE857_24940
DNA repair and recombination proteins [BR:
nex03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NE857_24940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
RecQ_Zn_bind
Pribosyltran
Motif
Other DBs
NCBI-ProteinID:
USY18524
LinkDB
All DBs
Position
complement(5639729..5642077)
Genome browser
AA seq
782 aa
AA seq
DB search
MATPIPPDVPAPATAAATGPEAPAPDPANPATGATASAGPANPTGSPDSANGPAADPTAE
TPAVRPGGPAREGTRDHLRERAEEHLRALAGESARLREDQWTAIHALVADRRRALVVQRT
GWGKSAVYFVATALRRAEGAGPTVIVSPLLALMRNQIAAAERAGIRARTINSSNTTAWES
TYAEVSQGLVDVLLVSPERLNNPEFRDRVLPELAAGAGLVVIDEAHCVSDWGHDFRPDYR
RIRSLLHDLPDGVPVLATTATANERVTHDVAEQLQAGADRADTLVLRGSLERESLSLGVA
ELPDPTARLSWLAEHLPEIPGSGIVYTLTVSAALETARFLGEQGLEVLPYTGQTDPDERR
LAEDALLGNRVKALVATSALGMGFDKPDLGFVIHLGAPQSPISYYQQVGRAGRGVERAEV
VLLPGREDVQIWEYFAGLSFPPEDTVRQTLQVLAEADKPLSTANLETRVDLRRTRLEQML
KVLDVDGAVCRVRGGWTATGRPWTYDAERYAAVSAAREREQRAMLDYIAADTCRMEFLRQ
QLDDPEAVACGRCDVCTGRYWSTDVDSGRRKAAADHLDRPGTPITPRRQWPTGMNTLGVN
LSGKIPENLRAGEGRALARLTDVGWGTELRRVLAEDAPDAPVDERLLQGVVRVLAAWGWE
NRPVGVVAMPSLTRPTLVGDLAARIAELGRLTPLGSLSYRSGNGPGPRRHNSAMRLGQVY
SELVAGADLEARLAELQGQRPGPVLLVDDLADTGWSLTVGAALLRRAGAPQVLPLTLATT
GG
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atggccacacccatcccgcccgacgtccccgccccggccacagcagccgccaccggcccc
gaggcccccgctcccgatcccgcgaaccccgccaccggtgccacagcctccgcaggtccc
gcgaaccccaccggctcaccggactccgccaacggacccgcagccgatccgacggccgaa
accccggctgtccggcccggcggacctgcgcgcgaaggcacccgggatcacttgcgcgaa
cgcgccgaggagcacctgcgcgccctcgccggggagtccgcgcgcctgcgcgaggaccag
tggaccgccatccacgccctggtcgcggaccggcggcgggccttggtcgtgcagcgcacc
ggctggggcaagtcggcggtctacttcgtggccaccgccctgcgccgcgccgagggcgcg
ggccccaccgtcatcgtctccccgctgctggcgctgatgcgcaaccagatcgccgccgcc
gagcgcgcgggcatccgcgcccgcaccatcaacagctccaacaccaccgcctgggaatcc
acctacgccgaggtctcccagggcctggtggacgtactcctggtcagccccgagcggctc
aacaaccccgagttccgcgaccgagtcctgcccgaactcgccgccggggcgggcctggtc
gtcatcgacgaggcccactgcgtctccgactggggccacgacttccgcccggactaccgc
cgcatccgctccctgctgcacgacctgcccgacggggtcccggtcctggccaccaccgcc
accgccaacgaacgcgtcacccacgacgtcgccgaacagcttcaggccggggccgaccgc
gccgacaccctggtcctgcgcggcagcctggaacgcgagagcctcagcctgggcgtggcc
gaactgcccgaccccaccgcccggctcagctggctggccgaacacctgcccgagatcccg
ggttcgggcatcgtgtacacgctcaccgtcagcgcggccctggagaccgcccgcttcctc
ggtgaacagggcctggaggtgctgccctacaccgggcagaccgaccccgacgagcgcaga
ctggccgaggacgccctgctcggcaaccgggtcaaggcactcgtggccaccagcgccctg
ggcatgggcttcgacaaaccggacctgggcttcgtcatccacctgggcgccccgcagtcc
ccgatctcctactaccagcaggtcggccgcgcgggccgcggtgtggagcgggcagaagtg
gtgctcctgcccggccgggaggacgtgcagatctgggagtacttcgcagggctgtccttc
ccgccggaggacaccgtccgccagaccctccaagtcctggccgaggccgacaaacccctg
tccaccgccaacctggagacccgggtggacctgcgccgcacccgcctggaacagatgctc
aaggtgctggacgtggacggggcggtgtgccgggtgcgcggcggctggaccgccaccggc
cgaccctggacctacgatgccgaacgctacgccgccgtcagcgccgcccgcgagcgcgaa
cagcgggccatgctcgactacatcgccgccgacacctgccggatggagttcctccgccag
cagctggacgaccccgaggcggtggcctgcgggcgctgtgacgtgtgcaccggccgctac
tggtccaccgacgtcgactccgggcgccgcaaggccgccgccgaccacctggaccggccc
ggcacccccatcaccccgcgccgccagtggcccaccggcatgaacaccctcggggtgaac
ctgtccggcaagatcccggagaacctgcgtgcgggggaggggcgtgccctggcccgcctc
accgacgtcggctggggcaccgaacttcgccgcgtcctcgccgaggacgcaccggacgcc
cccgtggacgagcggctccttcagggcgtggtgcgcgtgctggccgcctggggatgggag
aaccgcccggtcggcgtggtcgcgatgccctctctcacccggccgaccctggtcggcgac
ctcgccgcgcgcatcgccgaactcggccgcctgaccccgctcggctcgctttcctaccgg
agcgggaacggaccgggcccgcgccgccacaacagtgccatgcgcctgggccaggtgtac
tcggaactggtggccggtgcggacctggaggcccggctggccgagctccagggacagcgg
ccgggcccggtcctgctggtggacgacctcgccgacaccggatggagcctgaccgtcggc
gccgccctgctccgcagagcgggcgccccgcaggtcctacccctcaccctggccaccacc
ggcggctga
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