Nocardiopsis exhalans: NE857_27950
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Entry
NE857_27950 CDS
T08285
Name
(GenBank) right-handed parallel beta-helix repeat-containing protein
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
nex
Nocardiopsis exhalans
Pathway
nex00040
Pentose and glucuronate interconversions
nex01100
Metabolic pathways
nex02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
nex00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
NE857_27950
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
NE857_27950
Enzymes [BR:
nex01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
NE857_27950
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Paralog
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
DUF6239
Motif
Other DBs
NCBI-ProteinID:
USY19065
LinkDB
All DBs
Position
complement(6315940..6317103)
Genome browser
AA seq
387 aa
AA seq
DB search
MFTRQKRPVLLGLAATASLGLFAGAWFSVSGSTESGELTGNTDALDAATAADPLSDVPVG
YASMNGGTTGGFGGDTVNEYLLSEYSSWSEESTPGEALYEVLKDHIRADSDEGLVVYVDV
TVTPDQVGQDKIDVKDVSNVSVLGVGEDGRFDGIGFKVTRSENVVFRNLAIRDVSQGEGD
ALEVTENSSNVWIDHNEFSSQKEGVDKDFYDGLVDIKHGSEYVTVSWNKFEDHWKTALVG
HNDNPSSGPDRITYHHNLFSNLNTRVPLVRHADVHMLNNVFQDIDGSAINARMGARVLVE
GNHFDNVGSGEVDTHAGQIQGPVGWWYGSSETGYWNLVDNTFVDTPYEHLESTTDFTVPY
EYEAQSPEDAKTAVEAGAGTGVIDVQS
NT seq
1164 nt
NT seq
+upstream
nt +downstream
nt
atgttcactcggcagaagagacctgtcctcctcgggctggcggccaccgcgagccttggc
ctgttcgccggagcctggttctcggtgtccggaagcactgagagcggcgagctcaccggc
aacaccgacgcactcgacgccgcgaccgccgccgatccgctcagtgacgtcccggtcggt
tacgcgtcgatgaacggtggcaccaccggtggtttcggcggtgacaccgtcaacgagtac
ctgctgagcgagtactcctcctggagcgaggagagcacccccggcgaggcgctctacgag
gtgctcaaggaccacatccgggccgactccgacgagggcctggtcgtctacgtcgacgtc
accgtcaccccggaccaggtcggccaggacaagatcgacgtcaaggacgtctccaacgtc
tccgtcctgggtgtgggcgaggacggtcggttcgacgggatcggcttcaaggtcacccgt
tcggagaacgtcgtcttccgcaacctggcgatccgcgacgtctcccagggcgagggcgac
gctctggaggtgaccgagaacagttcgaacgtgtggatcgaccacaacgagttcagcagc
cagaaggagggtgtcgacaaggacttctacgacggtctggtcgacatcaagcacggttcg
gagtacgtgaccgtctcctggaacaagttcgaggaccactggaagaccgctctggtgggt
cacaacgacaaccccagctccggtccggaccggatcacctaccaccacaacctgttcagc
aacctgaacacccgggtgccgctggtgcgccacgcggacgtgcacatgctcaacaacgtg
ttccaggacatcgacggatcggcgatcaacgcccggatgggcgcccgcgtcctggtcgag
ggcaaccacttcgacaacgtcggatcgggtgaggtggacacccacgccggtcagatccag
ggtccggtgggctggtggtacggcagttccgagaccggttactggaacctggtcgacaac
accttcgtggacaccccgtacgagcacctggagtcgaccaccgacttcacggtgccctac
gagtacgaggcgcagagccccgaggacgccaagaccgccgtcgaagccggtgccggaacc
ggcgtgatcgacgtccagtcctag
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