Nocardiopsis exhalans: NE857_30565
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Entry
NE857_30565 CDS
T08285
Name
(GenBank) 2'-5' RNA ligase family protein
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
nex
Nocardiopsis exhalans
Brite
KEGG Orthology (KO) [BR:
nex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nex03016
]
NE857_30565
Enzymes [BR:
nex01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
NE857_30565
Transfer RNA biogenesis [BR:
nex03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
NE857_30565
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Motif
Other DBs
NCBI-ProteinID:
USY19533
LinkDB
All DBs
Position
complement(6888964..6889641)
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AA seq
225 aa
AA seq
DB search
MSLFLALWPSDEARDQLARAVRAARPSDPELRWTPAQEWHLTLVFLGAAGETPSGLSAAL
ERALVGRPALDLALDDWDTFPQRPPELRSSGGNGPGQRSSRGGVPKRRTSRGNGPEHRAS
VVWAGVRGEGLRELADSLAEAARAAGVPVPSRPFVPHVTLARARPSRDVTDTLRLLGPAP
TAGWRADRIHLVQSRPAGPDRYRTVRTWGLPWGSESQRDPERGTS
NT seq
678 nt
NT seq
+upstream
nt +downstream
nt
atgagtctgttcctcgcgctgtggccctccgacgaggcccgcgaccaactcgcccgggcc
gtgcgcgcggcccgcccctcggacccggagctgcgctggacccccgcgcaggagtggcat
ctgaccctggtcttcctgggagcggcgggggagacgccctccggactctccgccgcactg
gagcgggccctggtgggacggcccgccctggacctggccctcgacgactgggacaccttt
ccacagcggccaccggagctccggtcctccggaggcaacggccccggacagcggtcctca
cggggcggggtccccaagcgtcgaacctcccgaggcaacggccccgagcaccgggcctcg
gtggtgtgggccggggtgcgcggggaggggctccgcgagctcgcggactccctggccgag
gccgcacgcgccgcgggggtgcccgtcccgtcacgccccttcgtgccgcacgtcaccctc
gcccgggccaggccgtcccgggacgtcaccgacaccctgcgcctactcggcccagcgccc
accgcgggctggcgggccgaccggatccacctggtgcagagccgcccggcagggccggac
cgctaccggaccgttcggacctggggactaccctgggggagcgaatcccaacgagacccg
gagcggggcacgtcatga
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