Nocardiopsis exhalans: NE857_30645
Help
Entry
NE857_30645 CDS
T08285
Name
(GenBank) DEAD/DEAH box helicase
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
nex
Nocardiopsis exhalans
Pathway
nex03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nex00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
NE857_30645
09124 Replication and repair
03420 Nucleotide excision repair
NE857_30645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nex03021
]
NE857_30645
03400 DNA repair and recombination proteins [BR:
nex03400
]
NE857_30645
Enzymes [BR:
nex01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NE857_30645
Transcription machinery [BR:
nex03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
NE857_30645
DNA repair and recombination proteins [BR:
nex03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
NE857_30645
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
USY19547
LinkDB
All DBs
Position
6908984..6910630
Genome browser
AA seq
548 aa
AA seq
DB search
MSCLIVQSDKTLLLEIDHELAPECRRSIAPFAELERAPEHVHTYRVTPLALWNARAAGHD
AEQVVDALIRFSKFPVPHSLLVDIAETMDRYGRLRLVGDPVHGLVLESSDRAVLEEVVRA
KKLKGMLGERLGEDSVAVHPSERGNLKQALLKIGWPAEDLAGYVDGEAHEIDLADGDWEL
RGYQQEAAESFHAGGSGVVVLPCGAGKTIVGAAAMAMTGATTLILVTNTVSVHQWKSELL
KRTSLTEDEIGEYSGTKKEIRPVTIATYQVMAARRKGVYTHLELFDAKDWGLVVYDEVHL
LPAPIFRMTADLQARRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDMENQGWIAPAD
CVEVRVDLTESERMAYATAEPEDKYRFCASSETKTTVVQQIVERHPQEQVLVIGSYIDQL
DELGERLGAPVIKGETRNKERERLFDAFRAGELRTLVVSKVANFSIDLPEAGVAVQVSGS
FGSRQEEAQRLGRVLRPKADGRTARFYAVVARDTLDQDYAAHRQRFLAEQGYAYRIADAG
DLLAGEEI
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
gtgtcctgcctgatcgtccagtccgacaagacgctcctgctcgagatcgaccacgagctc
gccccggagtgccgccgttccatcgcgccgttcgccgagctcgaacgcgcccccgaacac
gtgcacacctaccgcgtcaccccgctggcgctgtggaacgcgcgcgccgccgggcatgac
gccgagcaggtcgtggacgcactcatccgcttctccaagttccccgtgccgcactcgctg
ctcgtggacatcgccgagacgatggaccgctacgggcggctcaggctggtgggcgacccg
gtgcacggcctggtgctggagtcctcggaccgcgcggtcctggaggaggtcgtgcgggcc
aagaagctgaaggggatgctcggcgagcgcctgggggaggactcggtcgcggtccacccc
agcgagcgcggcaacctcaagcaggccctgctgaagatcggctggcccgccgaggacctg
gccgggtacgtcgacggcgaggcacacgagatcgacctggccgacggcgactgggagctg
cgcgggtaccagcaggaggccgcggagagcttccacgcgggcggttccggcgtggtcgta
ctgccctgcggcgccgggaagacgatcgtgggcgcggccgccatggcgatgaccggggcg
accacgctgatcctggtgaccaacacggtgtcggtgcaccagtggaagtccgagctgctc
aagcggacctcgctgaccgaggacgagatcggtgagtactcggggaccaagaaggagatc
cgaccggtcaccatcgccacctaccaggtgatggcggcccgccggaagggcgtgtacacg
cacctggagctgttcgacgccaaggactggggcctggtggtctacgacgaggtgcacctg
ctgcccgcgcccatcttccggatgaccgccgacctccaggcccgccgccgcctgggactg
accgccaccctggtccgcgaggacggccgggagggcgacgtgttctcgctgatcgggccc
aagcgctacgacgccccgtggaaggacatggagaaccagggctggatcgccccggcggac
tgcgtggaggtccgggtggacctgaccgagtccgagcgaatggcgtacgcgaccgccgaa
cccgaggacaagtaccggttctgcgcctcctcggagaccaagacgaccgtggtccagcag
atcgtggagcgccacccgcaggagcaggtcctggtgatcggctcctacatcgaccagctc
gacgaactcggtgagcggctgggcgccccggtcatcaagggcgagacccggaacaaggag
cgcgaacgcctcttcgacgccttccgcgccggcgagctgcgcactctggtggtctccaag
gtcgccaacttctcgatcgacctccccgaggccggggtggcggtccaggtgtccggctcc
ttcggttcgcgccaggaggaggcccagcgcctgggccgggtgctgcgcccgaaggccgac
ggccgcaccgcccgtttctacgcggtggtcgcccgggacaccctggaccaggactacgcc
gcccaccgccagcggttcctggccgagcagggctacgcgtaccggatcgccgacgcgggc
gatctgctcgcgggcgaggagatctga
DBGET
integrated database retrieval system
