Neochlamydia sp. S13: NCS13_1_0083
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Entry
NCS13_1_0083 CDS
T05849
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ney
Neochlamydia sp. S13
Pathway
ney03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ney00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCS13_1_0083
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ney03021
]
NCS13_1_0083
03019 Messenger RNA biogenesis [BR:
ney03019
]
NCS13_1_0083
Transcription machinery [BR:
ney03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
NCS13_1_0083
Messenger RNA biogenesis [BR:
ney03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
NCS13_1_0083
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
S1CSD-TOTE-2
AAA_22
AAA
Mor
AAA_25
DUF5855
OB_RNB
NACHT
Motif
Other DBs
NCBI-ProteinID:
BBI16278
LinkDB
All DBs
Position
complement(108290..109657)
Genome browser
AA seq
455 aa
AA seq
DB search
MDPENTHLETPYSTFEEGEENQQEHPSINTTAIVPPGETIKIAEIQRMNIDQLNAFSKKI
GLKHLGSLTKSQMVFEIVKALSENPAEILYGEGVLEILPDGFGFLRSPNYNYLPSAEDIY
VSPAQIRRFDLKKGDTLSGTIRPPKDKEKYFALLKVDKINGKTPEKARERILFENLTALY
PSKRMVMETTKDKLSTRVLDLAAPIGKGQRGLIVAPPRTGKTIILQNIANAIAINNPEVI
VIVLMIGERPEEVTDMQRIVKGEVVSSTFDEPPERHVQVAEMVIEKARRLVEHGNDVVVL
LDSITRLARAYNTIEPHSGKILTGGVDANALHKPKRFFGAARNIEQGGSLTIIATALIDT
GSRMDEVIFEEFKGTGNMELVLDRRLAERRIYPAIDIIKSGTRKEELLYHPNELEKVYLL
RQAVADLAPNDAMNLVVGRLKKTNSNVEFLLSMKE
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atggatccagaaaacactcatttagagacgccctactctacctttgaagagggcgaagag
aatcaacaagagcacccatctatcaacacgacagctattgttccccctggcgaaacaatt
aaaatcgctgaaattcaacgcatgaatatcgatcaattaaacgcgtttagtaaaaaaatt
ggccttaaacacctaggatctcttactaaatctcaaatggtttttgaaatcgtcaaggcg
ctttcagaaaatcctgccgagattctgtatggcgaaggcgtattagaaattttgcctgac
ggatttggctttctacgctcccccaactataactatttaccttccgcagaagatatctac
gtttccccagcgcagattaggcgttttgatctgaaaaaaggtgacaccctttctgggact
attcggcctcctaaagataaagaaaaatactttgctcttctcaaagtggataaaattaat
ggaaaaactccagaaaaagcccgcgagcgaattctttttgagaatttaacagctctgtat
ccaagcaaacgtatggtcatggaaacaacaaaagacaagctatccacgcgtgttttggat
cttgcagctcctattggtaaaggccagcgtggactaattgtagccccccctcgtacaggt
aagacgattatccttcaaaatattgctaatgctatagctattaacaatccagaagtcatt
gttatcgtcctcatgatcggagaaagacctgaggaagtcacagacatgcagagaattgtt
aaaggagaagtcgtttcctcaacttttgatgaaccccctgaaagacacgtacaagtagca
gaaatggtcatcgaaaaagcaaggagattagtcgagcatggcaatgatgtcgttgttctg
ctagactctattacaagattggcccgtgcctacaatacaatagaaccccattccgggaaa
attttgacaggcggtgtagatgctaatgctttacataagcccaaacgtttctttggcgcc
gcaaggaatatcgagcagggaggttcgctgacaattattgctactgcattaattgataca
gggtctcgtatggatgaggttatttttgaagaattcaaaggtacaggtaatatggagcta
gtgcttgatcgacgtttagctgagcggcgtatttatccagcgattgatattattaagagt
ggaacccgtaaagaagagcttctctaccatcctaacgagctagaaaaggtctatttacta
cggcaagctgtagctgatctagcgcctaacgatgcaatgaatctagttgtaggccgcctg
aaaaaaactaatagcaatgtggaatttttattatctatgaaagaataa
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