Neochlamydia sp. S13: NCS13_1_1511
Help
Entry
NCS13_1_1511 CDS
T05849
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ney
Neochlamydia sp. S13
Pathway
ney03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ney00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NCS13_1_1511
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ney03400
]
NCS13_1_1511
Enzymes [BR:
ney01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NCS13_1_1511
DNA repair and recombination proteins [BR:
ney03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NCS13_1_1511
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
Cas3-like_C_2
IL33_bt
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
BBI17706
UniProt:
A0A3Q9XRY6
LinkDB
All DBs
Position
1925361..1928657
Genome browser
AA seq
1098 aa
AA seq
DB search
MFKEIIKSEKIQKLEEALKNHDSILIEETWNAAKAFITSLAKQATGKNILILTGASLEET
RLFHDFPFFAGQSAIEFPAWETLPSENIAPSPDVVGERYKVLEQLVQQEGPHIILSGLQA
CLQRLIPPQKFKQLYMHLTPQTSIPFGIFTERLVSMGYQRRAVAADKGEFAIRGGIIDIF
PVSSPDPFRLDFWGDEIESIRIYDPIGQKSIRSVEKVEIPPAKELELLKPEPHLCTLLDY
LGPETIVVFDDILALEDRYASLVNICGSSTPTFCSIGQFMEAMAPLQKIFLSQNPIEELS
EVRILDKTSTNYYSKQAPLYKLSFSLFASEFHARRWSHPFIPLSHFLLPEQAENAEINGQ
EILLSLSKLGQSDHHLHFLCDTPLEESNLKKRLQEAHITLPENTFFHLHYLSSGFVLEDQ
KLIILPATEITHRYKIRRQKQRSTYHTTPLESYDLSAGELVVHLNNGIGKFIGLEKRPNL
QGSLSEFFAIEYADNAKLFVPLNQAYLISKYVGANEEIPKLHHLGSSRWKKTKENTERAI
MSYAADLLELYAKRSVKEGYAYSEDSSDMQAFEEDFPFVETEDQLAAIAAIKADMQEKKC
MDRLICGDVGYGKTEVAMRAAFKAVVDGRKQVAVLVPTTVLAMQHYENFVERMSNFPINI
AVMSRFRSAKQMKETLEGIAKGSVDIIIGTHRLIGKDVIFKDLGLVIIDEEQRFGVKAKE
QLKKIKNSIECLTLSATPIPRTLYMSLIGARDMSVINTPPQDRLPITTLITESNDETLKN
ALLRELSRNGQAYLIHNRVESIYDYAARLKKLLPQARIVVGHGQMSSQEIDTVFHAFKSG
QADILVATTIVENGIDIPNANTILIDRADTFGLADLYQLRGRVGRWNRKAYAYFMVPRLR
SLPELSRKRLNALMEAQGYGGGMKIAMRDLEIRGAGNILGHEQSGQVAAIGFHLYCKLLK
RTIQTLQGKISSLLVDTKMDFPLLDARLPEEFINEVSLRMEIYQRLGEAITHEEVEAIWE
EIKDRFGTPPEAASWLYHLTKIRVYASTNGFTLLKLDKFCLSLEQQKGKQTKNKRTLIGS
FKNGKQLESKVIQAMQEM
NT seq
3297 nt
NT seq
+upstream
nt +downstream
nt
gtgtttaaagaaataatcaaaagtgaaaaaattcaaaagcttgaagaagctttaaaaaat
catgattccattcttattgaagaaacatggaatgcagccaaagcttttataacttcttta
gccaagcaagccactggcaaaaacattcttattttaacaggggctagcttagaagagacc
cgcttatttcacgattttccattttttgctgggcaatccgctattgaatttcccgcttgg
gagacgttgccctctgaaaacattgcacctagtcctgatgtagtgggcgagcggtataaa
gttttagaacagctagtgcaacaagaaggccctcacattattctttctggcctgcaagct
tgcctgcaacgtctgatccctcctcagaaattcaaacagctctacatgcacctgacccct
caaacatccattccttttggaatttttacagagcgccttgtgagcatgggatatcaaaga
agagctgtggctgccgataaaggagaatttgcgattcgcggcggaatcattgatattttt
cctgtttcttctcctgatcctttccggcttgacttttggggagatgaaattgaatccatc
cgcatctatgatcctattgggcaaaagtctatccgaagtgtagaaaaagtagagattccg
cctgctaaagagctggaattattaaaacctgagcctcatctatgcacactattggattat
ttaggtcctgagacgatcgtggtttttgatgacatactcgctttagaagaccgttatgct
tcccttgtcaatatttgtggtagctcaacgcctacattttgcagcatcggacagttcatg
gaagctatggcccccctacagaaaatctttcttagtcagaatcctatagaagaattgagc
gaagttcgcatccttgataaaacttcaacaaattattattctaaacaagctcccctctac
aagctctctttctctctattcgcaagcgaatttcatgctcgacgttggtctcatcctttc
attcctctcagtcatttcctgttgcctgaacaggcagagaacgcagaaattaacggccaa
gaaattctcttatccctctctaagctgggacaatcagatcatcatcttcactttctttgc
gacacgcccttagaagagagtaatctaaaaaaacgccttcaagaggctcatattaccctg
ccggaaaatacttttttccacctgcactatttatccagcggttttgtcttagaagatcaa
aagctgatcatcttacctgccactgagattacgcatcgatataaaatccgccgacagaag
cagcgtagcacttatcataccaccccgctagaaagctatgatttatctgcgggagagctt
gtagtgcaccttaataatggtatcggtaaatttattggattagaaaaacgccctaatctt
caagggagccttagtgaattttttgccattgaatatgccgacaacgctaaattatttgtc
cctcttaatcaagcctatttaattagcaaatatgtaggagctaatgaagaaattcctaaa
ctgcatcatctaggcagcagccgctggaagaagactaaagaaaatactgagcgggctatt
atgagctatgcggccgaccttttagagttatacgctaagcgctccgtgaaagaaggctat
gcctattcggaagacagctcagatatgcaagcttttgaagaagactttccttttgtggaa
actgaagatcaactagctgctatcgctgccattaaagctgacatgcaggaaaaaaaatgc
atggatcgcctaatttgtggcgatgtggggtatgggaaaacggaagtcgctatgcgggct
gcttttaaagcagtggttgacggtaggaaacaggttgcagtcttagttcccaccaccgtg
ctagccatgcagcattatgaaaattttgttgaaagaatgagcaactttcctatcaatatc
gccgtcatgtctcgctttcgttcggccaagcaaatgaaagagaccttggagggcattgct
aagggctctgtcgatattattattggtacccatcgtttgataggcaaagatgtaattttt
aaagatttggggctggttatcattgacgaagagcaacgttttggcgttaaagctaaagaa
cagctgaaaaagattaaaaattctattgaatgtttaacgctttctgctacgccaatcccg
cgtaccctctacatgtcactcatcggagcacgcgacatgtctgtcattaatactccccct
caagatcgcctgcccattaccactctcatcacggaatctaatgacgaaacacttaagaat
gctttactacgtgaactatctcgtaatggtcaagcctatctcatccataatcgcgtagaa
tccatctatgattatgccgcccgcctcaaaaaacttttaccccaagctcgcattgtcgta
ggacatggacaaatgagcagccaagaaatagatactgttttccatgcttttaaaagcggc
caagcagatatcttggtagctacgacaattgtagaaaacggcattgatattcctaatgcc
aacaccattttaatcgatcgtgccgatacttttggactcgcggatctataccaattgcgt
ggccgagtaggccgatggaatagaaaagcttatgcctattttatggttccccgtctacgt
tcgttaccagaactttcgcgcaaaaggctgaatgctttaatggaagcgcaaggatatggt
ggcggtatgaaaattgctatgcgcgatctcgaaatccgaggagcaggaaatattttgggc
catgaacaatccgggcaagtagctgctattggctttcatttatattgcaagctactaaaa
agaactatacagactttgcaaggtaaaatatccagtttacttgtggatactaaaatggat
tttcccctgctggacgcacgattgccagaagaatttattaatgaagttagcttacgcatg
gaaatttatcaaagattaggagaagccatcacccatgaagaggtagaggctatctgggaa
gaaattaaagaccgtttcggaacacctcctgaagctgctagttggctatatcatcttaca
aaaatacgtgtatatgcttctacgaatggctttacccttttaaagctagataagttttgt
ttaagcttagagcagcaaaaaggtaagcaaacaaaaaataagcgaacgctaataggttcc
tttaaaaatggtaagcagctggagagcaaggttattcaagctatgcaagagatgtag
DBGET
integrated database retrieval system
