Neochlamydia sp. S13: NCS13_1_1652
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Entry
NCS13_1_1652 CDS
T05849
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ney
Neochlamydia sp. S13
Brite
KEGG Orthology (KO) [BR:
ney00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ney03016
]
NCS13_1_1652
Enzymes [BR:
ney01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
NCS13_1_1652
Transfer RNA biogenesis [BR:
ney03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
NCS13_1_1652
Prokaryotic type
tRNA splicing ligases
NCS13_1_1652
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
BBI17847
LinkDB
All DBs
Position
complement(2125099..2126508)
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AA seq
469 aa
AA seq
DB search
MNPKEFQALLDQKIFTSSEKDKAWTLYKKESPQKALAFLKTIEDKFGSIRRSLLLHPLPV
PYKVWGENYIEAETIAQMDRAARLPVALAGALMPDAHLGYGLPIGGVLATENSVIPYAVG
VDIACRMKLTIYPLPAHVLENPTSVEYKNLYSALLNNTVFGAGAAGIHKGKIDHPILEKS
HWELSPLIRSLRQTAIYQIGTSGGGNHFVEWGELKIFETENPFKLAAGTYLALLSHSGSR
GVGFKIADYYTKMAMAQLRELDHSVKHLAWLPLDHDLGREYWEAMQLAGQFASANHHVIH
QRIAEAVGIAPIATVENHHNFAWREKIHVQGKEKEAIVHRKGSTPSGKGVLGIIPGTMAD
AGYVVVGKGNLDSLSSASHGSGRQMARTKAKKTISLEQHLNSLLKQGIDLIGGGLDESPQ
AYKPIEAVMKEQKDLVDVIGKFQPKIVRMAAEGSLSSLSSLPQGIVEGE
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atgaacccgaaagaatttcaagcattacttgatcaaaagatattcacttcgtccgaaaaa
gataaagcatggactttgtacaagaaagaaagcccacaaaaagctcttgccttcttaaaa
acgattgaagataaatttggctctataagaagaagtttgctgttacaccctttaccggtt
ccttataaagtttggggagagaattatattgaagcagagacgatagcccagatggataga
gctgctcgtctacctgtagcgctagcaggggccttgatgcctgatgcgcatctagggtat
ggccttccaatcgggggagttttggctacagaaaattctgttattccctatgccgtaggg
gtcgatattgcttgtaggatgaagctgaccatttaccctctcccggcacatgttttagaa
aatcctacgagcgttgagtataaaaacctttattcagctctgctaaataatactgtattt
ggtgcaggcgctgccggcatccacaaaggtaaaatcgaccatccaatattagaaaaatcc
cattgggaactttccccattgatacgttctttaaggcaaacggctatttaccaaattggt
acgagtgggggaggaaatcatttcgtggaatggggtgagctaaaaatttttgagacagaa
aatccttttaagcttgcggcgggaacttacctggcgttgctctcacacagtggttcaaga
ggagtgggttttaaaatagctgattattatactaagatggccatggcccagctaagagaa
ttggaccattctgttaagcatttagcttggctacctcttgatcatgatctaggtagagag
tattgggaggcgatgcagctggcagggcaatttgcttctgccaatcaccatgttattcac
caaagaatagcagaggcagtaggaatagctcccattgctacggtggagaatcaccataat
ttcgcttggcgggaaaagattcatgtgcagggaaaggaaaaagaggctatcgtccatcgt
aaaggttcaacacctagtggaaaaggtgttttagggattattccaggaacgatggctgat
gccggctatgtggttgtaggtaagggcaatctagattcattaagctctgcttcgcatggc
agcggccgccaaatggcgcgcactaaagcaaaaaaaacgatttccttagaacagcatctc
aattctttattaaagcagggtatagatttaataggcgggggattagacgaatcacctcag
gcttataaacctatcgaggcagtcatgaaagagcagaaagatttagttgatgtaatagga
aaattccagccaaaaattgtacgcatggccgctgaaggtagcttaagctcactatcttca
ttgcctcaaggaattgtagaaggtgagtaa
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