Nocardia farcinica IFM 10152: NFA_13690
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Entry
NFA_13690 CDS
T00207
Name
(GenBank) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
nfa
Nocardia farcinica IFM 10152
Brite
KEGG Orthology (KO) [BR:
nfa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nfa03016
]
NFA_13690
Enzymes [BR:
nfa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
NFA_13690
Transfer RNA biogenesis [BR:
nfa03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
NFA_13690
Prokaryotic type
tRNA splicing ligases
NFA_13690
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
BAD56214
NIH_Japan:
nfa13690
UniProt:
Q5Z027
LinkDB
All DBs
Position
complement(1534409..1535626)
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AA seq
405 aa
AA seq
DB search
MFPVELSGARARTLMWAHEDEIEAAALQQLRNIARLDWVHGVRVMPDVHLGKGATVGSVI
AMRDAVAPAAVGVDIGCGMESVRTDLTAADLPDDLRSLRSRIEAAVPVGFAAHKDAVQVR
KLAARPSGVTTATLRTGWERFWAEFGALDERVTGREAKAHKQMGTLGGGNHFIEVCLDQD
DQVWILLHSGSRNIGKELAERHMEVARRLPHNQHLVDRDLAVFLAGTPEMAAYRHDLTWA
QEYAARNRAVMLALVCQAIREEFPAREVRFDEPISCHHNYVAEEIVDGMPMLVTRKGAVR
AGAGDLALIPGSMGTRSYVVRGKGNPASFQSASHGAGRRMSRNAAKRQFSVADLVAQTEG
VESRKDAGVLDEIPAAYKNIDEVIEAQRDLVDVVATLRQVLCVKG
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
atgtttcccgtcgagttgtccggtgcccgggcacggacgttgatgtgggcccacgaggac
gagatcgaggcggccgcgctgcagcaactgcgcaacatcgcccggctcgactgggtgcac
ggcgtccgtgtcatgccggacgtgcatctcggcaagggcgcgaccgtcggctcggtgatc
gccatgcgcgacgcggtggcaccggcggcggtcggcgtcgacatcggctgcggcatggag
agcgtgcgcaccgacctcaccgccgcggacctgcccgacgacctgcgctcgctgcggtcg
cggatcgaggcggccgtgccggtcggcttcgccgcgcacaaggacgcggtccaggtgcgc
aagctcgccgcgcgcccgtccggggtgaccacggcgaccctgcgcaccggctgggagcgg
ttctgggcggagttcggcgcgctcgacgagcgggtgaccgggcgggaagccaaggcccac
aagcagatggggaccctgggcggcggcaaccacttcatcgaggtctgcctggaccaggac
gaccaggtgtggatcctgctgcactcgggcagccgcaacatcggcaaggagctggccgag
cggcacatggaggtggcgcggcggctgccgcacaaccagcacctggtcgaccgcgatctg
gcggtgttcctggcgggcaccccggagatggcggcctaccggcacgacctgacctgggcc
caggagtacgccgcccgcaaccgggcggtgatgctggcgctggtgtgccaggcgatacgg
gaggagttcccggccagggaggtccgcttcgacgagccgatctcgtgccatcacaactac
gtggccgaggagatcgtcgacgggatgccgatgctggtcacccgcaagggcgcggttcgc
gcgggcgcgggcgatctggcgctgatccccggctcgatgggcacgcgctcctacgtggtg
cgcggtaagggcaatccggcctccttccagtcggcctcgcacggtgcggggcggcggatg
agccgcaacgccgccaagcgccagttcagtgtcgccgatctggtggcccagaccgagggc
gtggaatcccgcaaggacgccggtgtcctcgacgagatcccggccgcgtacaagaacatc
gacgaggtgatcgaggcgcagcgcgatctggtcgatgtggtggcgaccctgcgtcaggtg
ctctgcgtcaaaggctga
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