Nocardia farcinica IFM 10152: NFA_18750
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Entry
NFA_18750 CDS
T00207
Symbol
polA
Name
(GenBank) putative DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
nfa
Nocardia farcinica IFM 10152
Pathway
nfa03030
DNA replication
nfa03410
Base excision repair
nfa03420
Nucleotide excision repair
nfa03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nfa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NFA_18750 (polA)
03410 Base excision repair
NFA_18750 (polA)
03420 Nucleotide excision repair
NFA_18750 (polA)
03440 Homologous recombination
NFA_18750 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nfa03032
]
NFA_18750 (polA)
03400 DNA repair and recombination proteins [BR:
nfa03400
]
NFA_18750 (polA)
Enzymes [BR:
nfa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NFA_18750 (polA)
DNA replication proteins [BR:
nfa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NFA_18750 (polA)
DNA repair and recombination proteins [BR:
nfa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
NFA_18750 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NFA_18750 (polA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_polI_exo1
DNA_pol_A_exo1
HHH_5
DNA_pol_lambd_f
FLP26
Motif
Other DBs
NCBI-ProteinID:
BAD56721
NIH_Japan:
nfa18750
UniProt:
Q5YYM0
LinkDB
All DBs
Position
2047290..2050022
Genome browser
AA seq
910 aa
AA seq
DB search
MSSPTTASRSTPAPGAEGGRPTLLLLDGHSLAYRAFFALPAENFKTVTGQTTNAVYGFTA
MLINLLRDEKPTHIAAAFDVSRKTFRTEAYPEYKANRSQTPDEFRGQVELTKDVLGALGI
PVMAIDGFEADDVIATLTTQAKAEGFRILIVTGDRDSIQLVDDDVTVLYPRKGVSDLTRF
TPEEVMTKYGLTPNQYPDYAALRGDPSDNLPGIPGVGEKTAAKWIREYGDLATLVDKVDT
VKGKVGDALRAHLSSVVLNRQLTEMVKDVPLPYTPDQLAQGPWDREKIHRLFDDLEFRVL
RDRLFETLAPPQQEAESGFEISGGALAVGAVADWLAEHAKAGVRHGVSVVGSGAPARGDV
QALAIAAADGESGYIDVTVLTPEDEAALAAWLADPAVPKALHEAKSAMHALRGRGWTLGG
LTSDTALAAYLVRPGQRSFNLDDLSLRYLHRELRAETDDNAQLSLLDDEDAVDAETARAE
MLRARAVLDLAAALDAELEQIESTALLTDMELPLLGVLATLEEAGIAVDCEQLEALQRQF
ADKVAQAAEAAYGVIGKQINLGSPKQLQVVLFDELDMPKTKRTKTGYTTDADALESLFEK
TQHPFLEHLLAHRDATRLKVTVDGLLKSVADDGRIHTTFNQTIAATGRLSSTEPNLQNIP
IRTDTGRMIRDTFVVGPGYAELMTADYSQIEMRIMAHLSGDEGLIEAFNSGEDLHSFVAS
KAFDIPIAEVSPELRRRIKAMSYGLAYGLSSYGLSAQLKISTAEAKEQMDIYFSRFGRIR
DYLYEVVEQARKVGYTETLFGRRRYLPDLDSSNRQRREAAERMALNAPIQGTAADIIKVA
MIDVHRGIREAGLRSRMLLQIHDELVFEVAEGERDALEQLAREKMSAAIALSVPLDVSVG
TGRSWDAAAH
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
gtgagctcaccgacgactgcctcgcgttccactcccgctcccggcgccgagggcgggcgg
ccgaccctgctgttgctggacgggcactcgctcgcctaccgcgcgttcttcgccctaccg
gcggagaacttcaagacggtcaccgggcagaccaccaacgccgtctacggcttcaccgcc
atgctcatcaacctcctgcgcgacgagaagcccacgcacatcgccgcggccttcgacgtc
tcccgcaagaccttccgcaccgaggcctaccccgagtacaaggccaaccgcagccagacg
ccggacgagttccgcgggcaggtcgagctcaccaaggacgtgctcggcgcgctcggcatc
ccggtcatggcgatcgacggtttcgaggccgacgacgtgatcgccacgctcaccacccag
gccaaggccgagggtttccgcatcctcatcgtcaccggcgaccgcgactcgatccagttg
gtcgacgacgacgtcaccgtgctctacccgcgcaagggcgtctcggacctcacgcggttc
actcccgaggaggtgatgaccaaatacggtctcacccccaaccagtacccggactacgcg
gcgctgcgcggcgaccccagcgacaacctgcccggcattcccggcgtgggggagaagacc
gcggcgaagtggatccgcgagtacggcgacctggccacgctggtggacaaggtggacacc
gtcaagggcaaggtcggtgacgcgctgcgcgcccatctgagcagtgtggtgctcaaccgg
cagctcaccgagatggtcaaggacgtgccgctgccctacacgccggatcagctggcgcag
gggccgtgggaccgcgagaagatccaccgtctcttcgacgacctcgagttccgggtgctg
cgcgaccgcctgttcgagacgctggcgccgccgcagcaggaggccgagtccgggttcgag
atcagcggcggcgcgctggccgtcggcgcggtcgccgactggctcgccgaacacgcgaaa
gccggtgtgcgccacggtgtctcggtggtcggtagcggcgcgcccgcgcgcggtgacgtg
caggcgctggccatcgccgccgccgacggcgagagcggctacatcgacgtcaccgtgctc
acccccgaggacgaggcggcgctggccgcctggttggccgacccggcggtgcccaaggcg
ctgcacgaggccaagtcggccatgcacgcgttgcgcgggcgcggctggacgctgggcggg
ctcaccagcgacaccgccctggcggcctatctggtgcgccccgggcagcgcagcttcaac
ctcgacgacctctcgctgcgctatctgcaccgcgagttgcgcgccgagaccgacgacaac
gcccagctctcgctgctcgacgacgaggacgccgtcgacgccgagaccgcgcgcgcggag
atgctgcgcgcccgcgccgtgctcgacctggccgccgcgctggacgccgaactcgagcag
atcgagtccaccgcgctgctcaccgacatggaactgccgctgctcggcgtgctcgccacg
ctggaggaggcgggcatcgcggtggactgcgagcagctcgaggcgctgcaacgacaattc
gccgacaaggtggcccaggccgccgaggccgcctacggggtgatcggcaagcagatcaac
ctcggctcgcccaagcagctgcaggtggtgctgttcgacgagctcgacatgcccaagacc
aagcgcaccaagaccggctacaccaccgacgccgacgcgctggaatcgctgttcgagaag
acccagcaccccttcctggaacatctgctcgcccaccgcgacgccacccggctgaaggtg
accgtcgacggcctgctcaagtcggtggccgacgacgggcgcatccacaccaccttcaac
cagaccatcgccgcgaccggccggttgtcctccaccgagccgaacctgcagaacatcccc
atccgcaccgacaccggccggatgatccgcgacaccttcgtggtgggccccggctacgcg
gagctgatgaccgccgactacagccagatcgagatgcgcatcatggcgcacctgtccggc
gacgagggcctgatcgaggccttcaactcgggggaggacctgcacagtttcgtcgcgtcc
aaggccttcgacatcccgatcgcggaggtgagcccggagctgcgccgccggatcaaggcc
atgtcctacgggctggcctacgggctgagttcctacgggctgtccgcccagctcaagatc
agcaccgccgaggccaaggagcagatggacatctacttctcccgcttcggccgcatccgc
gactacctgtacgaggtggtcgagcaggctcgcaaggtcggctacaccgagaccttgttc
ggtcgccgccgctacctgcccgacctggactcgagcaaccggcagcgccgcgaggccgcc
gagcggatggcgctcaacgcgccgatccagggcaccgcggccgacatcatcaaggtggcg
atgatcgacgtgcaccgcggcatccgggaggccgggctgcgctcgcggatgctgctgcag
atccacgacgaactcgtcttcgaggtggccgagggcgagcgggacgcgctcgagcagctg
gcgcgggagaagatgtccgcggccatcgcgctgtcggtgccgctggacgtgtcggtgggc
accgggcgcagctgggacgccgccgcgcactga
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