Nocardia farcinica IFM 10152: NFA_23560
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Entry
NFA_23560 CDS
T00207
Name
(GenBank) hypothetical protein
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
nfa
Nocardia farcinica IFM 10152
Pathway
nfa03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
nfa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
NFA_23560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nfa03400
]
NFA_23560
Enzymes [BR:
nfa01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
NFA_23560
DNA repair and recombination proteins [BR:
nfa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
NFA_23560
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-ProteinID:
BAD57203
NIH_Japan:
nfa23560
UniProt:
Q5YX88
LinkDB
All DBs
Position
complement(2520786..2521592)
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AA seq
268 aa
AA seq
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MPSGTRPPPVPRAGAAPARARYRSIADLDADIAACRACPRLVRWRELVAETKRAAFRDET
YWGRPVPGFGPDDARLLLVGLAPAAHGGNRTGRMFTGDRSGDVLFAALHAVGLANQPTAV
HPGDGLRLLGARVTAPVHCAPPDNKPTVTERDRCRGWLDVELGLLAPTVRAIVVLGGFGW
QALLPALAEAGWAVPRPPEVRARGAGAAGTGRRGPRAARAVRLLPRQPAEHLHRQADPGD
ARSRAGRGRRRRRTADHVVSDCTERARR
NT seq
807 nt
NT seq
+upstream
nt +downstream
nt
atgccctccggtacgcgaccgccgcccgttccccgcgccggtgccgcgccggcgcgcgcc
cgctaccgcagcatcgccgacctcgacgccgacatcgccgcctgccgcgcctgcccccgg
ctggtgcggtggcgcgaactcgtcgccgagaccaagcgcgcggcgttccgcgacgagacg
tactggggccgcccggtgcccggcttcggtcccgacgacgcccggctgctgctcgtggga
ctcgcgcccgccgcgcacggcggcaaccggaccgggcggatgttcaccggtgaccgcagc
ggtgacgtcctcttcgccgccctgcacgcggtcggcctggccaatcagcccaccgcggtg
catcctggcgacgggctgcgcctgctcggcgcgcgggtgaccgccccggtgcactgcgcc
ccgccggacaacaaacccacggtgaccgaacgcgatcggtgccgaggctggctcgacgtc
gagctcgggttgctcgcgccgaccgtgcgggccatcgtggtactcggcggcttcggctgg
caggcgctgctgcccgcgctggccgaggcggggtgggcggtgccacggccgcccgaagtt
cgggcacggggtgcgggtgcggctggaaccggccgccgcggaccgcgcgccgctcgagct
gttcggctgctaccacgtcagccagcagaacaccttcaccggcaggctgaccccggcgat
gctcgaagccgtgctggccgaggccgccgacgccgccggactgcggaccacgtcgtgagc
gactgtacggaaagggcacgccgatga
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