KEGG   Nocardia farcinica IFM 10152: NFA_27650
Entry
NFA_27650         CDS       T00207                                 
Symbol
hsdR
Name
(GenBank) putative restriction-modification system endonuclease
  KO
K01153  type I restriction enzyme, R subunit [EC:3.1.21.3]
Organism
nfa  Nocardia farcinica IFM 10152
Brite
KEGG Orthology (KO) [BR:nfa00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:nfa02048]
    NFA_27650 (hsdR)
Enzymes [BR:nfa01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.21  Endodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.21.3  type I site-specific deoxyribonuclease
     NFA_27650 (hsdR)
Prokaryotic defense system [BR:nfa02048]
 Restriction and modification system (R-M system)
  Type I R-M system
   NFA_27650 (hsdR)
SSDB
Motif
Pfam: ResIII EcoEI_R_C SWI2_SNF2 DEAD DUF4145 HSDR_N Helicase_C T1RK_2nd HSDR_N_2 AAA_30 T1R_D3-like DUF6415 UPF0242 AAA_19 DUF2576 BBP1_C
Other DBs
NCBI-ProteinID: BAD57612
NIH_Japan: nfa27650
UniProt: Q5YW29
LinkDB
Position
2929350..2932793
AA seq 1147 aa
MVGNFDFLQAEWPQLYAEAKKAERDALFDPRTTCFYARRTVEHTVMWIYRAQNLPEPYKS
DLAARIHDGKFVGVVGHALVTKMDLIRRLGNTAVHDAKPVSKDAGHKALAELFHILSWLA
RTYATQPSSKPSPQQQFDPGRLPKPGGGAVVAKTVAQLGKLEAELAAKDALLEKSEAEKQ
DLIAQLKARDEASETAELEKASYEQLIAELRAQIHAAQQASAATPDTHDYDEAQTRRDLV
DLMLREAGWMLDQKRDREFPVTGMPDGKNGFVDYVLWGADGLPLAVVEAKKTSVDPFAGQ
QQAKLYADCLEQQFGRRPVIYYSNGFEHHFWDDLRYPPREIAGFHTRDELELLVARRTTR
KALSEMPVPQEIAGRPYQERAIRAVTERFEAENQRAALLVMATGSGKTRTVVALTDMLMR
ANWVKRVLFLADRKALVKQAVGAFKTHLPDSSPVNLLTDKNTEGRVYVSTYPTMMGLIDE
TDGGTRRFGPGYFDLIVIDEAHRSVYQKYRHIFRYFDSLLLGLTATPKDEVDYNTYQLFH
LETGVPTNDYPLDEAIADEYLVPPRAVDVPLSFPLRGIRYADLTEEEKKRYESIDWGDDV
ADDEIPDVVQAEAVNKWLFNTDTVDKVLETLMTHGHRVAGGDRLGKTIVFAKNELHAKFI
ADRFDVSYPEFKGSFARVITHSVSYSQDLIDKFSQPDQEPHIAISVDMLDTGIDVPEVVN
LVFFKPVRSKSKFWQMVGRGTRLCPDLYGPGQDKTDFFIFDVCGNFDYFEQHPDASEGAL
APSLSQRLFTTRTELLAALDNSGASQALRRDTADLLHGQVAGMRLDNFIVRTRRRQVEKY
ADRAAWESLTDQQVAEIIDNLADLPTTIRDNDEMAKRFDLVVLRGQLALLVADGTLPRHA
DTIRSVVNGLLDEGLTIPKVKAKEELLREVASDEWWEDITVDMLEHARRELRSIVGLLDK
KKRVVVYTDFTDTLGEVVERDMPEMRSGTDIERYTAKVRDYLRRQPDNLALQKLRSGKPL
TPVDLESLEELLARSGAGEPEDMERAVANAHGLGRFIRSLVGLDQQAVQEAFAEFLGERT
ATASQIDFVNLVIGHLTRHGEMDPKLLFEPPFTDAAPQGPTQLFAPEQTKRLLGVIRSIN
ESVGVSA
NT seq 3444 nt   +upstreamnt  +downstreamnt
atggtggggaacttcgacttcctgcaggccgaatggccgcagctgtatgccgaggccaag
aaggccgagcgcgacgccctgttcgacccgcgcaccacctgcttctacgcgcgccgcacc
gtggagcacacggtcatgtggatctatcgcgcgcagaacctgcccgagccgtacaagtcg
gacctcgcggcccggatccacgacggcaagttcgtcggggtcgtcggccacgcactcgtc
acgaagatggacctcatccgccgactgggcaacacagccgtccacgacgccaagcccgtg
tcgaaggacgccggccacaaggcgctcgccgagctgttccacattctgtcatggctggcc
cgcacctacgcgacccagccgtcgagcaagccgtcgccgcagcagcagttcgaccccggt
cggctgcccaagccgggtggtggtgcggtcgtggcgaagaccgtcgcgcagctcggcaag
ctcgaggccgagctggccgccaaggacgcgctgctcgagaagtccgaagccgagaagcag
gacctcatcgcacagctcaaggcccgcgacgaggcctccgagacggcggaactcgagaag
gccagctacgagcagctgatcgcggagttgcgcgcccagatccacgccgcgcagcaagcg
agcgccgcaacccccgacacgcacgactacgacgaggcgcagacccggcgcgacctggtc
gatctcatgctccgtgaggccggctggatgctcgaccagaaacgggaccgcgagttcccc
gtcaccggaatgcccgacggcaagaacggattcgtcgactacgtgctgtggggcgcggac
ggtttgccgctggcggtcgtcgaggcgaagaagacatccgtcgatccgtttgccggtcag
cagcaggcgaagctgtatgccgattgcctcgagcagcagttcggcaggcggccggtcatc
tactacagcaatgggttcgaacatcacttctgggatgacctgcgctatccgccgcgggag
atcgccggttttcacacccgtgacgaactcgagctcctcgttgcccgtcggacgacgagg
aaggcgctcagcgagatgcccgtaccccaggagatcgccggtcggccgtaccaggagagg
gcgatccgcgccgtcaccgagcggttcgaggccgagaaccagcgtgctgcgctcctcgtc
atggccaccggctcgggcaagacgcgcaccgtcgtggcgctcaccgacatgctgatgcgc
gccaactgggtcaagcgggtgctgttcctcgccgaccggaaggccctggtcaagcaggcc
gtcggcgcgttcaagacacacctgccggactcgtcgccggtgaacctgctgaccgacaag
aacaccgaggggcgggtctacgtctccacctatcccacgatgatggggttgatcgacgaa
accgacggaggcaccaggcgattcggccccggctacttcgatctcatcgtgatcgacgag
gcgcaccgatcggtgtaccagaagtaccggcacatcttccggtacttcgactcgctgctc
ctcggactcaccgcgaccccgaaggacgaagtcgactacaacacctaccagttgttccat
ctcgaaaccggcgtcccgaccaacgactacccgctcgatgaggccatcgccgacgagtac
ctggtcccgccacgtgcggtggacgtcccgctgtccttcccgttgcggggaatccgctat
gccgacctcaccgaggaggagaagaagcggtacgagtccatcgactggggcgacgatgtc
gcagacgacgagatccccgacgtcgtgcaggccgaggccgtcaacaagtggttgttcaac
accgacaccgtcgacaaggtcctcgaaaccctgatgacccacggccatcgcgtcgccggc
ggcgaccggctcggcaaaaccatcgtcttcgcgaagaacgagctgcacgccaagttcatc
gccgaccgattcgacgtgagctacccggagttcaagggctcgttcgcgcgcgtcatcacc
cactcggtcagctacagtcaggacctcatcgacaagttctcccagcccgaccaggaaccg
cacatcgcgatctccgtcgacatgctcgacaccggtatcgatgtccccgaggtcgtgaat
ctcgtgttcttcaagccggtgcggtcgaagtcgaaattctggcagatggtgggtcgtggc
actcggctgtgccccgacctgtacggtcccggccaggacaagaccgatttcttcatcttc
gacgtctgcggcaacttcgactacttcgagcagcaccccgacgcctcggaaggagcactc
gcgccgtcgctctcacagcggctgttcaccacccgaaccgaactgctcgccgctctcgac
aactccggcgcatcgcaggcgttgcggcgcgacaccgcggacctgctccacgggcaggtc
gccgggatgcgactggacaatttcatcgttcgcacccggcgccgtcaggtggagaagtac
gccgaccgcgccgcctgggaatccctcaccgaccagcaggtcgcggagatcatcgacaat
ctcgcggacctgcccaccaccatccgcgacaacgacgagatggcgaaacgcttcgatctc
gtcgtcctgcgcggacagctcgctctcctcgtcgccgacggtaccctgccgcggcacgcc
gacacgatccgcagcgtcgtgaacggccttctcgacgagggactcaccatcccgaaggtg
aaggcgaaggaagaactgctgcgcgaggtcgcgagcgacgagtggtgggaggacatcacc
gtcgacatgctcgagcacgctcggcgagagctccgttccatcgtcgggttgctcgacaag
aagaagcgcgtcgtcgtctacaccgacttcaccgacaccctcggcgaggtcgtcgaacgg
gacatgcccgagatgcggtccggtaccgatatcgagcggtacacggcgaaggtacgtgac
tatctgcgccgtcagccggacaacctggcgctgcagaagctgcgatcgggcaagccgttg
acaccggtcgatctggaatcactcgaggaactgctggcccgcagtggcgccggcgaaccg
gaggacatggaacgcgccgtcgccaacgcgcacggactcggacgtttcatccgctccctc
gtcggcctcgatcagcaggccgtgcaggaagcgttcgccgagttcctcggcgaacgcacc
gccaccgcaagtcagatcgacttcgtcaacctcgtcatcggccacctcacccggcacggc
gagatggacccgaagctgctgttcgagccgccgttcaccgacgcggcgccgcagggcccg
acgcaactgttcgcccccgagcagacaaagcggctcctcggcgtgattcggtcgatcaac
gagtcggtcggcgtgagcgcctga

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