Nocardia farcinica IFM 10152: NFA_28360
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Entry
NFA_28360 CDS
T00207
Name
(GenBank) putative DNA glycosylase
KO
K03649
double-stranded uracil-DNA glycosylase [EC:
3.2.2.28
]
Organism
nfa
Nocardia farcinica IFM 10152
Pathway
nfa03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
nfa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
NFA_28360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nfa03400
]
NFA_28360
Enzymes [BR:
nfa01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.28 double-stranded uracil-DNA glycosylase
NFA_28360
DNA repair and recombination proteins [BR:
nfa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
NFA_28360
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-ProteinID:
BAD57683
NIH_Japan:
nfa28360
UniProt:
Q5YVV8
LinkDB
All DBs
Position
complement(3022429..3022983)
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AA seq
184 aa
AA seq
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MVSAAYRPTPADLAAAAGTTIPDVVGPDLRVLFCGINPGLWSGATGHHFARPGNRFWPAL
FRSGFTPRLFRPDEQEELLALGLGITNVVPRTTAKADELTTAELREGGRALTERVRRYRP
KALAVLGIGAYRTAFGRPRTTVGRQDETIADTEIWVLPNPSGLNAHYTLDALAAEFRALR
EATR
NT seq
555 nt
NT seq
+upstream
nt +downstream
nt
atggtatcggcggcgtatcgacccacgcccgcggatctggcggccgccgccgggacgacg
attcccgacgtggtggggccggatctgcgggtgttgttctgcgggatcaatccggggctg
tggtcgggggcgaccgggcatcacttcgcgcggccgggaaaccggttctggcccgcgctg
ttccgttccggattcaccccgcgcctgttccgaccggacgagcaggaggaactgctcgcc
ttgggattgggaatcacgaacgtggtgccgcggacgacggccaaggcggacgagctgacc
accgcggagttgcgcgagggcggtcgggcgctgaccgaacgagtccggcgataccgtccg
aaagcgctggccgtgctcgggatcggcgcctaccggaccgcgttcggccgcccgcgcacc
accgtcggccgccaggacgagacgatcgccgacaccgagatctgggtgctacccaacccc
agcggactcaacgcgcactacaccctcgacgccctggccgcggagttccgcgccctccga
gaagcgacgcgctag
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integrated database retrieval system