Nocardia farcinica IFM 10152: NFA_40530
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Entry
NFA_40530 CDS
T00207
Symbol
truB
Name
(GenBank) putative tRNA pseudouridine synthase
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
nfa
Nocardia farcinica IFM 10152
Brite
KEGG Orthology (KO) [BR:
nfa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nfa03016
]
NFA_40530 (truB)
Enzymes [BR:
nfa01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
NFA_40530 (truB)
Transfer RNA biogenesis [BR:
nfa03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
NFA_40530 (truB)
Prokaryotic type
NFA_40530 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C
TruB_C_2
Motif
Other DBs
NCBI-ProteinID:
BAD58901
NIH_Japan:
nfa40530
UniProt:
Q5YSE0
LinkDB
All DBs
Position
complement(4199619..4200539)
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AA seq
306 aa
AA seq
DB search
MGERSAPTRRVDPLGGLLVVDKDGGMTSHDVVARCRKILGTRKIGHAGTLDPMATGVLVL
GVERATKLLGLLTLTTKAYTATIRLGSATTTDDAEGEVLTTVPAGHLGDAEVAAGVAALT
GDIQQVPATVSAIKIGGERAYARHRAGEQVELAARPVTVSRFEVLARRDVAGFVDLDVVV
ECSSGTYVRALARDLGAALGVGGHLTALRRTRVGPFTLDHARTLDALADEPRLNLDMDEA
VRIAFPHRAIDAREAESLRDGRWLDPVGIPGVYAALTADGTAIALLEEKGKRASPVFVVR
PRGLVD
NT seq
921 nt
NT seq
+upstream
nt +downstream
nt
atgggcgagcgcagcgcaccgacgcgccgcgtcgacccgctcggcgggctgctcgtcgtc
gacaaggacggcggcatgaccagccacgacgtcgtcgcgcgctgccggaagatcctgggc
accaggaagatcgggcacgcgggcaccctcgacccgatggccaccggcgtgctggtgctc
ggcgtggagcgggccaccaagctgctcgggttgctcaccctcaccaccaaggcctacacc
gcgaccatccgcctcggcagtgccaccaccaccgacgacgccgagggcgaggtgctcacc
accgtcccggcgggccacctcggcgacgccgaggtcgccgcgggggtggcggcgctgacc
ggcgacatccagcaggtgcccgccaccgtcagcgcgatcaagatcggcggcgagcgcgcg
tacgcccgccatcgcgcgggggagcaggtcgagttggccgcgcggccggtgacggtgtcg
cgcttcgaggtcctggctcgccgcgacgtcgccggattcgtcgacctcgacgtggtggtg
gagtgctcctcgggtacctacgtgcgggcgctggcccgagatctgggtgcggcgctcggt
gtcggcggccacttgacggcgctgcgccgcacccgggtgggcccgttcaccctcgaccac
gcccgcacgctcgacgcgctcgccgacgagcctcggctgaacctcgacatggacgaggcc
gtgcgaatcgccttcccgcaccgggcgatcgacgcccgcgaggcggagtcgctgcgcgat
ggccgctggctcgacccggtcggcatccccggcgtgtacgccgccctgaccgccgacggc
accgccatcgcgctgctcgaggagaagggcaagcgcgcctcgccggtattcgtggtgcgc
ccacgcggtctggtggactga
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integrated database retrieval system
