Nocardia farcinica IFM 10152: NFA_44830
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Entry
NFA_44830 CDS
T00207
Name
(GenBank) putative helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
nfa
Nocardia farcinica IFM 10152
Pathway
nfa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nfa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NFA_44830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nfa03019
]
NFA_44830
03400 DNA repair and recombination proteins [BR:
nfa03400
]
NFA_44830
Enzymes [BR:
nfa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NFA_44830
Messenger RNA biogenesis [BR:
nfa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NFA_44830
DNA repair and recombination proteins [BR:
nfa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NFA_44830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
Helicase_C
RecQ_Zn_bind
Motif
Other DBs
NCBI-ProteinID:
BAD59334
NIH_Japan:
nfa44830
UniProt:
Q5YR57
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All DBs
Position
complement(4646436..4648301)
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AA seq
621 aa
AA seq
DB search
MDHPDAFSPATDAPSGAGIGAAQEVLRRVFGYDSFRGDQAAIVEHVIGGGDALVLMPTGG
GKSLCYQVPALVRPGVGVVVSPLIALMQDQVDALSALGVRAGFLNSTQFPDERATVEAQF
LAGELDLLYLAPERLRLESTARLLDRGTVALFAIDEAHCVAQWGHDFRPDYLALSMLHER
WPDVPRIALTATATEKTRDEIIHRLDLGSARRFVASFDRPNIQYRIEPKNRAERQLLDFI
RTEHPGDAGIVYCLSRNSVEKTAAFLNENGIGAVPYHAGLDNRTRAANQSRFLREDGLVV
VATIAFGMGIDKPDVRFVAHLDLPKSVEGYYQETGRAGRDGLPATAWMVYGLNDVVQQRK
LIDSSEGDAAHRRQLQLHLDAMLALCETVDCRRAQLLAYFGQHGTGCGNCDTCLTPPESW
DGTVAAQKLLSAVLRLDRERGQAFGAGHVLDILLGKKNPKVLQYDHHELTVFGVGADLRD
TEWRGVVRQLLAQGLLAVRGDYGVLTLTPASEEVLFGGRKVMLRREPERPVKQARGGKSA
RAVVADLPAADVPVFEKLREWRAATAKEQGVPAYVVFHDATLREIAARKPTTLAELGGVG
GVGENKLAKYGQQVLDVLAAA
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
gtggatcaccccgacgccttctcgcccgccaccgacgccccctccggggccggaatcggt
gcggcacaagaggttctgcggcgcgtcttcgggtacgacagcttccgcggcgaccaggcg
gccatcgtcgagcacgtcatcggcggtggcgacgccctggtgctgatgccgaccggcggc
ggcaagtcgctgtgctaccaggtgcccgccctggtgcggcccggtgtcggggtggtggtc
tcgccgctcatcgcgttgatgcaggaccaggtcgacgccctgtccgcgctgggcgtgcgc
gccggcttcctcaactccacccagttccccgacgagcgcgccaccgtcgaggcgcagttc
ctggccggggagctcgacctgctctacctcgccccggagcggctgcggctggagtccacc
gcacgactgctcgaccgtggcacggtcgcgttgttcgccatcgacgaggcgcactgcgtc
gcgcagtggggccacgacttccgccccgactacctggcgctgtcgatgctgcacgagcgc
tggccggacgtgccgcgcatcgcgctcaccgccaccgccaccgagaagacccgcgacgag
atcatccaccggctcgacctcgggtcggcgcgccgcttcgtcgccagcttcgaccggccc
aacatccagtaccgcatcgagccgaagaaccgcgccgagcggcaactgctcgatttcatc
cgcaccgagcaccccggcgacgcgggcatcgtgtactgcctctcgcgcaactccgtggag
aagaccgccgccttcctgaacgagaacggcatcggggcggtgccgtatcacgctggcctg
gacaaccgcacccgcgcggcgaaccagtcccggttcctgcgcgaggacggcctcgtggtg
gtcgccaccatcgccttcggcatgggtatcgacaagccggacgtccgcttcgttgcccat
ctcgacctgcccaaatcggtggagggctactaccaggagaccggtcgcgcgggccgcgac
ggactgcccgcgaccgcgtggatggtctacggcctcaacgacgtggtgcagcagcgcaaa
ctcatcgactcctccgagggcgacgccgcgcaccgcaggcagttgcagctgcatctggac
gcgatgctcgcgctgtgtgaaaccgtggactgtcgccgtgcgcaactgctggcctacttc
ggtcagcacggcaccggctgcggcaactgcgacacctgcctgactccacccgagtcctgg
gacggcaccgtggctgcccagaaactgctctcggcggtgctgcggctcgaccgggaacgt
ggccaggccttcggcgcgggccacgtgctcgacatcctgctcggcaagaagaaccccaag
gtgctgcagtacgaccaccacgaactgacggtgttcggtgtcggtgccgatctgcgcgac
accgagtggcgcggcgtggtgcgacaactcctggcacaggggttgctcgcggtgcgcggc
gactacggggtgctgacgctcaccccggccagcgaggaggtgctcttcggcggccgcaag
gtgatgttgcggcgcgaacccgagcgcccggtcaagcaggcgcgcggcggtaagtccgcg
cgcgcggtggtcgccgatctgcccgccgccgacgtgccggtgttcgagaagctgcgcgaa
tggcgggccgccacggccaaggaacagggggtgcccgcctacgtcgtcttccacgacgcg
acgctgcgcgagatcgccgcgcgcaagccgaccacgctggccgagctcggcggcgtcggc
ggcgtcggcgagaacaagctggccaagtacggtcagcaggtgctcgacgtgctcgccgcc
gcatga
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