Nocardia farcinica IFM 10152: NFA_45730
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Entry
NFA_45730 CDS
T00207
Name
(GenBank) putative ATP-dependent RNA helicase
Organism
nfa
Nocardia farcinica IFM 10152
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Cas3-like_C_2
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
BAD59424
NIH_Japan:
nfa45730
UniProt:
Q5YQW7
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All DBs
Position
4755923..4759369
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AA seq
1148 aa
AA seq
DB search
MTRKGTILSKITIEQEPGLTDTMLTAELDTTHTPPTFAELGVRDEIVRALAEIGIERTFA
IQELTLPLALAGEDLIGQARTGMGKTFGFGVPLLHRIATADSGTTPLDGTPRALVIVPTR
ELCIQVTDDLVRAGKYLRNHKGALKVTAIYGGRPYDSQIAALREGVDVVVGTPGRLLDLA
KQNHLILGKIGVLVLDEADEMLDLGFLPDIERILTMVPAKRQTMLFSATMPGPIITLART
FLTRPTHIRAEEPHDSAVHDRTAQFVYRAHALDKAELIARVLQAEGRGATMIFTRTKRTA
QKVADDLAERGFAVGAVHGDLGQVQREKALDKFRKGVIDVLVATDVAARGIDIDDVTHVI
NYQCPEDEKTYVHRIGRTGRAGRTGVAVTLIDWDELNRWAAIDAALGLGIPEPVETYSRS
PHLFSDLGIPEGVTGTVRRAAPARTADETVAERPARTPRKRNRRRTLRGKPIDATQNGGA
PDGVSTNGAAENGEPQAETAAVADTAPTPSQNQEHGGGEGGSSSRRKRRRRRRGSSSEAN
AVVQQGDSTDDSTAGDTGRAPTETTPVTAADEAGTTATSAGLDAEPTVAEPTGATERPAR
RRTRKGTATADDSRPADSTEGAATDPTADATAAVAAATAEEATGAPAAPRRRTRTRAATV
TAGTADATAPEAGTATTVDAGPIAAPAETGSVAAPADSGNGSASAGSAPAAGDIGTAPAA
GDIGTAPAATEAAPRRRTRKAATAASADAASNDAGTSDAASATGSTGAAATSSEEAPAPR
RRTREATSATPAADTTTGDAASAADPVHAGDAAAPSEEAPAPRRRTRKAATEDAVAATAT
ADTGEAATSSEQAPAPRRRTRKATTATPAAATATDAVSATAPASTGEAAAPSEEAPAPRR
RTRKATTAPADVTAAQAADTSTADLTAPTASTAADGGAASSAAAAPADTASADAAPAPRR
RATRKSAAATAETGAATADPAAATADTPASGQAPADDATATTDAEPAPRRRTRKTATTTA
DTEATATTDADATRRRRTRKATTTTADTEATATTDAEPAPRRRTRKATTTTADTEATATT
DADATPRRRTRKTADTEATESAEGAAPRRRTRTADDVESGAQPAPKRTRKKAAGEQQVEV
TAGSSASA
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgacgaggaaaggcacgatcctgagcaagatcaccatcgagcaggaacccggtctgacg
gacacgatgctgaccgccgaactggacacgactcacactcccccgactttcgccgaattg
ggggtccgcgacgaaatcgtgcgcgcgctcgccgagatcggcatcgaacgcactttcgcg
atccaggaactcaccctgccgctggcgctggccggcgaggacctcatcggccaggcccgc
accggcatgggcaagaccttcggtttcggcgtgccgctgctgcaccgcatcgccaccgcc
gactccggcaccacgcccctggacggcaccccgcgcgcgctggtgatcgtgccgacccgg
gagctgtgcatccaggtcaccgacgatctggtgcgagcgggcaagtacctgcgcaaccac
aagggcgcgctgaaggtgaccgccatctacggcggccggccctacgactcccagatcgcc
gcgctgcgcgagggcgtcgacgtggtcgtgggcacacccggccgcctcctcgatctggcc
aagcagaaccatctcatcctcggcaagatcggcgtgctggtgctcgacgaggccgacgag
atgctggatctgggcttcctgcccgatatcgagcgcatcctcaccatggtcccggccaag
cggcagaccatgctgttctcggccaccatgccgggcccgatcatcaccctggcccgcacg
ttcctcacccgcccgacccacatccgggccgaggagccgcacgattcggccgtgcacgac
cgcaccgcgcagttcgtctaccgcgcgcacgcgctggacaaggccgagctgatcgcacgg
gtgctgcaggccgagggccgcggcgccaccatgatcttcacccgcaccaaacgcaccgcc
cagaaggtggccgacgacctggccgagcgcggtttcgccgtcggcgccgtgcacggcgat
ctcgggcaggtgcagcgcgagaaggcgctggacaagttccgcaagggtgtcatcgacgtg
ctcgtcgcgaccgatgtcgccgcgcgcggcatcgacatcgacgacgtcacccacgtcatc
aactaccagtgccccgaggacgagaagacctacgtccaccgcatcggccgcaccggccgc
gcgggccgcaccggcgtcgcggtgaccctcatcgactgggacgagctcaatcgctgggcc
gccatcgacgccgccctcggcctcggcatcccggaaccggtcgagacgtattcgcgctcc
ccgcacctgttttcggatctgggcattcccgaaggggtcaccggcacggtccgccgcgcc
gccccggcacgcaccgcggacgagaccgtcgccgagcgtccggcccgcaccccgcgcaag
cgcaaccgcaggcgcacgctgcgcggcaagccgatcgatgcgacgcagaacggtggcgca
ccggacggtgtgtccacgaacggtgccgccgagaacggtgaaccgcaggccgagaccgcg
gcggtagcggacacggccccgacaccgtcgcagaaccaggagcacggcggcggcgaaggt
ggctcgtcgtcgcggcgcaagcgcaggcgtcggcggcgcgggtcgtcgtccgaagcgaat
gccgttgtgcagcagggtgattcgaccgacgactcgacggcaggcgataccggccgggcc
ccgacggagaccaccccggtcaccgcggccgacgaggcgggcaccaccgcgacctccgcc
ggcctcgatgcggaaccgacggtcgccgagcccacgggggcgacggaacgtcccgcccga
cgccggacccggaagggcaccgcgacggccgacgacagccgcccggccgactcgaccgaa
ggcgccgccaccgaccccaccgccgatgccaccgccgcggttgccgcggcgaccgcggag
gaagcaaccggcgcacccgcggctccccgccgccgcacccgcacccgcgcggccaccgtc
accgcaggcacggccgacgcgaccgcacccgaggcgggcaccgcgacaacggtcgacgcc
ggcccgatcgcggccccggcggagaccggcagtgtcgcggcgccagccgacagcggcaac
ggctcggcatccgccggcagcgccccggcagcgggtgacatcggcaccgctccggcggcg
ggtgacatcggcaccgctccggcggcgaccgaggccgctccccgccgacgcacgcgcaag
gcagccacggccgcctcggccgacgccgcctcgaacgacgccggcacgtccgatgccgcc
tcggcaaccgggagcaccggcgcagcggcgacatcgagcgaggaggcaccggcaccgcgc
cgacgcacccgcgaggccacctcggcgactccggccgcggacacgaccaccggcgacgcg
gcctcggctgctgacccggtgcacgccggtgacgcggcggcaccgagcgaggaagcgccc
gcaccgcgccgacgcacccgcaaagcggccaccgaagacgccgtcgcggccacggccacc
gctgataccggcgaagcggcgacatcgagcgagcaggcaccggcaccccggcgacgcacc
cgcaaggccaccaccgcaactccggccgcggccaccgcgaccgacgcggtctcggcgaca
gcgcccgcgagcaccggcgaagcggcggcaccgagcgaggaagcaccggcaccccggcga
cgcacccgcaaggccaccaccgcaccggccgatgtgaccgctgcccaagcggcggacaca
tcgacggccgacctgaccgccccgacggcgagcactgcggctgatggcggagcggcaagc
agcgcggccgccgctccggcggataccgcctccgccgacgcggcaccggccccgcggcgc
cgcgccactcggaagtcggccgccgcgacggccgagaccggtgccgcgaccgccgacccc
gcggccgcgacggccgataccccggcgtccgggcaggcacccgccgatgacgcgacggcg
accaccgacgccgaaccggcaccgcgccgccgcacccggaagaccgccaccacgacggcc
gacaccgaggcaacggcaaccaccgacgccgacgccacacggcgccgccgcacccggaag
gccaccaccacgacggccgacaccgaggcaacggcaaccaccgacgccgaaccggcacca
cgccgccgcacccggaaggccaccaccacgacggccgacaccgaagcgacggcaaccacc
gacgccgacgccacaccgcgccgccggacgcggaagacggctgacaccgaggcgacggag
tcggcggagggcgctgccccacggcggcggacccgcacggccgacgatgtcgaatcgggt
gcgcagcccgctccgaagcggaccaggaagaaggcggcgggcgagcagcaggtggaggtg
acggcggggtcgtcggcttcggcgtag
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