Nocardia farcinica IFM 10152: NFA_46690
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Entry
NFA_46690 CDS
T00207
Name
(GenBank) putative endonuclease IV
KO
K01151
deoxyribonuclease IV [EC:
3.1.21.2
]
Organism
nfa
Nocardia farcinica IFM 10152
Pathway
nfa03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
nfa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
NFA_46690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nfa03400
]
NFA_46690
Enzymes [BR:
nfa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.21 Endodeoxyribonucleases producing 5'-phosphomonoesters
3.1.21.2 deoxyribonuclease IV
NFA_46690
DNA repair and recombination proteins [BR:
nfa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
NFA_46690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AP_endonuc_2
Motif
Other DBs
NCBI-ProteinID:
BAD59520
NIH_Japan:
nfa46690
UniProt:
Q5YQM1
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All DBs
Position
4870791..4871561
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AA seq
256 aa
AA seq
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MRIGAHVRLDSDPIGFGEKLGADVIQMFVVDPQSWDKPVPHPRTEEILASPIDVVVHSSY
QINVASLNNRLRMPSRNAVAQQAKAAADLGAFGLVVHGGHVRSDAEIETGIDNWRKLFQR
QQDKGGFAVPILIENTAGGNHAMARHFDMIGRLWDAVGEFGAGFCLDTCHAWAGGEDLVG
VVERIKGITGRIDLVHLNSSRDEFNSGADRHANFADGTIDPQLLAEVCRTAGAPVVLETP
AEGVADDLAYLREHVG
NT seq
771 nt
NT seq
+upstream
nt +downstream
nt
atgcgcattggagcacacgtccggctcgacagcgatcccatcggcttcggcgagaaactc
ggcgccgacgtcatccagatgttcgtcgtcgacccgcagagctgggacaaacccgtgccg
cacccgcggaccgaggagatcctggccagcccgatcgatgtggtggtgcactcctcgtat
cagatcaacgtcgccagcctgaacaaccggctgcggatgccctcgcgcaacgccgtggcc
cagcaggcgaaagcggcggccgacctcggcgccttcggattggtggtgcacggcgggcat
gtgcgctccgacgccgagatcgagaccggtatcgacaactggcgcaagctgttccaacgc
cagcaggacaagggcggcttcgcggtgccgatcctcatcgagaacaccgcgggcggcaac
cacgcgatggccaggcacttcgacatgatcggccgcctgtgggacgcggtcggcgagttc
ggcgccggcttctgcctggacacctgccacgcctgggcgggtggtgaggacctggtcggg
gtggtcgagcggatcaagggcatcaccggccgcatcgatctggtgcacctgaactcctcg
cgcgacgagttcaactccggcgccgaccggcacgccaacttcgccgacggcaccatcgac
ccgcagctgctggccgaggtgtgccgcaccgcgggcgcgccggtggtgctggagaccccc
gccgaaggggtcgccgacgacctggcctacctgcgcgagcacgtcgggtga
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