Nocardia farcinica IFM 10152: NFA_47900
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Entry
NFA_47900 CDS
T00207
Symbol
alkA
Name
(GenBank) putative 3-methyladenine DNA glycosylase
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
nfa
Nocardia farcinica IFM 10152
Pathway
nfa03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
nfa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
NFA_47900 (alkA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
nfa03000
]
NFA_47900 (alkA)
03400 DNA repair and recombination proteins [BR:
nfa03400
]
NFA_47900 (alkA)
Enzymes [BR:
nfa01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
NFA_47900 (alkA)
Transcription factors [BR:
nfa03000
]
Prokaryotic type
Helix-turn-helix
AraC family
NFA_47900 (alkA)
DNA repair and recombination proteins [BR:
nfa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
NFA_47900 (alkA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ada_Zn_binding
AlkA_N
HTH_18
HTH_AraC
HhH-GPD
Motif
Other DBs
NCBI-ProteinID:
BAD59642
NIH_Japan:
nfa47900
UniProt:
Q5YQ99
LinkDB
All DBs
Position
4999860..5001302
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AA seq
480 aa
AA seq
DB search
MDCVTITALDFERCYRAVSTRDSRFDGQFFTAVRTTGIYCRPSCPAITPKRANVTFLPTA
AAAQQAGYRACRRCLPDAAPGSPLWNTRADLAARAMRLIGDGVIERGGVPALAAALGYSQ
RQLTRVLTTELGAGPLALARAHRAHTARLLIQTTDMPMSDVAFAAGFASIRQFNDTVREV
FAVSPTVMRAEAKRSRRSAPATNGTLTLRLPFREPLDRAWLEWFLSAHAAPGMESWADGT
YTRALRTPHGHAIVRLGFGDDHVRAQLALHDMRDLAPTVARVRHLLDLDADPMGIDEVLG
VAPGIRVPGCLEPAELLLRTMIGQQISVGAAATHTARLVAALGEPVDGTALRLFPTAATL
AEHGADVLTGPARRVRSIVRAAAAVASGELALHQGRTATDLRADLLALDGVGPWTADYVT
MRLLADPDILLSTDLVVRQGADLLGLDLTDTARWAPWRSYLSMHLWKTALAARVPGRRAG
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
gtggactgcgtgacgatcaccgcgctggatttcgaacgctgctatcgagcggtctccacc
agggactcccgcttcgacggccagttcttcacggcggtgcgcaccacggggatctactgt
cggccgtcctgcccggcgatcacccccaagcgcgccaacgtgacgttcctgccgaccgcc
gcggccgcgcagcaggcgggctaccgcgcctgccgccgctgcctgcccgatgccgcgccg
ggctccccgctgtggaacacgcgcgccgacctggccgcgcgggcgatgcggctgatcggc
gacggggtgatcgaacgcggcggcgtgcccgcgctggcggcggcactgggctactcccag
cggcagctgacccgggtgctgaccaccgaactcggcgcgggcccgctggcgttggcgcgc
gcccaccgcgcccacaccgcgcggctgctgatccagaccaccgacatgccgatgtcggat
gtcgcgttcgcggccggattcgccagcatccgccagttcaacgacacggtgcgcgaggtg
ttcgccgtcagccccacggtgatgcgcgccgaggccaagcggtcccggcgcagcgcaccg
gccaccaacggcacgctgacgctgcggctgccgttccgggaaccgctggaccgcgcctgg
ctggagtggttcctgagcgcgcacgcggcgcccggcatggagtcgtgggcggacggcacc
tacacccgcgccctgcggacaccgcacgggcacgcgatcgtgcggctcgggttcggcgac
gaccatgtgcgggcccagctcgcgctgcacgacatgcgcgatctggcgccgacggtggcg
cgggtgcggcacctgctcgacctcgatgccgacccgatggggatcgacgaagtgctgggg
gtcgcgccgggcatccgggtgcccggctgcctggaaccggcggagttgttgctgcgcacc
atgatcgggcagcagatctcggtgggtgcggcggccacgcacaccgcgcggctggtggcg
gcgctgggcgagcccgtggacgggaccgcgctgcgactgttccccaccgccgccaccctc
gccgaacacggcgccgacgtgctcaccggacccgcccgccgggtgcggtcgatcgtgcgg
gccgccgcagccgtcgcctccggtgaactggcgttgcatcagggccgcacggccaccgac
ctgcgagccgacctgttggcgctcgacggcgtcggcccctggaccgccgactacgtgacc
atgcggttgctcgccgaccccgacatcctgctgagcaccgacctggtcgtccggcagggc
gccgacctgctcggcctggacctcaccgacaccgcccgctgggcgccgtggcggtcctac
ctgtccatgcacctgtggaagaccgcgctggccgcccgtgttcccggccgccgcgcgggc
tga
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