Nocardia farcinica IFM 10152: NFA_47920
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Entry
NFA_47920 CDS
T00207
Symbol
sbcC
Name
(GenBank) putative ATP-dependent dsDNA exonuclease
KO
K03546
DNA repair protein SbcC/Rad50
Organism
nfa
Nocardia farcinica IFM 10152
Brite
KEGG Orthology (KO) [BR:
nfa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nfa03400
]
NFA_47920 (sbcC)
DNA repair and recombination proteins [BR:
nfa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
NFA_47920 (sbcC)
Archaeal homologous recombinant proteins
NFA_47920 (sbcC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
AAA_27
AAA_29
SMC_N
ABC_tran
AAA_21
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BAD59644
NIH_Japan:
nfa47920
UniProt:
Q5YQ97
LinkDB
All DBs
Position
complement(5001869..5005051)
Genome browser
AA seq
1060 aa
AA seq
DB search
MRLHRLEMTAFGPFAQPTVVDFDALGADGLFLLHGQTGAGKTTVLDAIAFALYGRVPGAR
GESKRLHSDHAPAQTPPRVVLEATLGGRRLRLTRSPEFERPKLRGSGMRTEQPKATLEWL
DGRGENLSRIPDIGEEIVRLLGMSADQFFQVVLLPQGDFARFLRAENEDREKLLEKLFDT
RRFGVAEQWLAERRRASAADLEQRKQGIERLIAQIRGAAGLSVTESVGVLECVDWSQELL
ATARDELAAATADAAAREQECAHLRKEAEELRTLDDLRRRMTAAHDQLTRYHATADQRGA
RRAELEAARRAQPVTEAIDEARAAVMESRHRENEARTAARALATALAVPEAADLRADLLV
SDEGAVGPDSSREGAPVAETIGMTSALGSQEPEDTAAGRAAAGSETTDPHLRDGADLDAA
VRRWSTLIGALDAVRADATTAAESTAELANLRAEDDDLARRTAELIERRAALPESITAVD
RRLREAGDAAAALPALAAECERLQSAASAAVELAKRRTALDATRVEFETARAAHNDARER
VLEVRERRLAGMAAELASALVDGQPCAVCGSREHPAPAEPADRAVSKEAEDAAVAAERAA
EQRRDEIGARIAGLEREIEALIARGGDTDRVELAAALRSATARYEDAADTAAQREAAQAE
LDRLRGEEARSHDDLRAAEARRSAVAARIAATEDRLARATESLRRAAGADTDVEQRRTRL
EALIDTATVLLRARAAVATARQHVTVVAKRVENLAAAAGFVPDEVPEDEVARLTAFARVV
NAAARPRPRQDEIEAELTAADRARAAAEAVLAEPEIQAAAAAEPGDLVAVEQALTHAQQR
SNAAVAAKAEAGRRVQLLEELGTQLWTEVDRLAPLQRAHDELDRLADVVAGRGENNRRMS
LRSYVLAARLEEVALAGSVRLRRMSGGRYEFVHSDKAGPRGRRGGLGLDIRDDYTGAVRP
AKTLSGGETFMASLALALGLADTVAAESGGVVLDTLFIDEGFGSLDADTLDAVMGVLDEL
RAGGRVVGIVSHVDEMRQRIPSRLHVIRGRDGSRLETTVA
NT seq
3183 nt
NT seq
+upstream
nt +downstream
nt
atgaggctgcatcggctggagatgacggcgttcggcccgttcgcgcagccgacggtggtc
gatttcgacgcgctcggcgccgacgggctgttcctgttgcacggccagaccggcgcgggc
aagaccaccgtgctcgacgccatcgcgttcgcgctgtacggccgggtgcccggcgcgcgc
ggggagagcaaacgcctgcattccgaccacgcgcccgcgcagacgccgccgcgggtggtg
ctggaggcgacgttgggtggccggcggctgcggctgacccgctcgccggagttcgagcgg
cccaagctgcgcggcagcggcatgcgcaccgagcagccgaaggcgactttggagtggctg
gacgggcgcggggagaacctgtcccgcatccccgatatcggtgaggagatcgtgcggctg
ctcggcatgagcgccgaccagttcttccaggtggtgctgctgccgcagggcgacttcgcg
cggttcctgcgcgcggagaacgaggaccgcgagaagctgctggaaaagctgttcgatacc
cgccgtttcggtgtggccgaacagtggctggccgagcggcgccgcgcgtcggccgccgat
ctcgaacagcgcaagcagggcatcgagcggctgatcgcccagatccgcggcgcggcgggg
ttgagtgtcaccgaatcggtcggggtgctcgaatgcgtggactggtcccaggaactgctc
gccaccgcccgggacgagctggccgccgccaccgccgacgccgccgcgcgcgaacaggaa
tgcgcccatctgcgcaaggaagccgaggaactgcgcaccctcgacgacctgcgccgccgg
atgaccgccgcccacgaccagctcacccgctaccacgccaccgccgatcagcgcggcgcc
cgccgagccgaactcgaggccgcccgccgcgcccagccggtcaccgaagccatcgacgaa
gcccgcgccgccgtcatggaatcgcgccaccgcgagaacgaagcccgcacggccgcccga
gctctcgccaccgccctcgcggtccccgaggccgccgacctccgcgccgacctgctggtc
tcggatgagggtgcggttgggccggattcatcacgcgaaggcgcgcccgtcgccgaaacc
atcggcatgacttcggctctcggatctcaggagccggaggacactgcggcgggacgtgcg
gcggcgggctcggagaccaccgacccccacctgcgcgacggcgccgacctcgacgccgcg
gtgcgcaggtggagcaccctgatcggcgcactggacgccgttcgcgccgacgcgacgacc
gccgccgaatcgacggccgagctggcgaacctgcgggccgaggacgacgacctggcacgt
cggaccgcggaactgatcgagcgcagggcggccctgccggagtcgatcaccgccgtggac
cgccggttgcgggaagcgggtgacgcggccgccgcgctgcccgcactggccgccgagtgc
gaacgcctgcaatccgccgcgagcgccgcggtggagctggccaagcgccgcaccgcgctg
gacgcgacccgcgtggaattcgagacggcccgcgccgcgcacaacgacgcgcgcgagcgg
gtgctcgaggtgcgggagcggcggctggcggggatggccgccgagctggcgagcgcgctg
gtcgacgggcagccctgcgcggtgtgcgggtcgcgtgagcatcccgccccggccgaaccc
gccgaccgcgcggtgtcgaaggaggccgaggacgccgccgtcgccgccgaacgggcggcc
gagcagcgccgcgacgagatcggcgcccgcatcgcgggattggagcgcgagatcgaagcg
ctcatcgcccggggcggcgacaccgaccgtgtcgagctggccgccgcgctgcgctcggcc
actgcccgctacgaggatgcggccgacacggcggcgcagcgcgaggccgcccaggcggag
ctggaccggttgcgtggcgaggaggcccgcagccacgacgacctgcgcgcggccgaggcc
cggcgcagcgccgtggccgcccggatcgccgccaccgaggatcgcctggcccgggcgacg
gaaagcctgcgccgggccgcgggcgccgacaccgatgtcgagcagcggcgcacgcgcctg
gaagcgctcatcgacaccgcgaccgtgttgctccgggcgcgcgccgccgtcgccacggcc
cgccagcacgtcaccgtggtcgccaagcgcgtcgaaaacctcgccgccgcagcggggttc
gtgccggatgaggtgcccgaggacgaggtcgcccggctcaccgcgttcgctcgcgtggtg
aacgcggccgcccggccccggccgcggcaggacgagatcgaggccgaactgaccgccgcc
gaccgcgcccgcgccgccgccgaagcggtcttggccgagccggagatccaggccgccgcc
gcggccgaaccgggtgacctggtcgcggtcgagcaggcgctgacccacgcgcagcagcgc
tcgaacgccgcggtggcggccaaggcggaggccggcaggcgggtgcaactgctcgaggaa
ctcggcacccagctgtggaccgaggtcgaccgcctcgccccgctgcaacgcgcccacgac
gaactcgaccgtctcgccgacgtggtcgccgggcgcggcgagaacaaccgccgcatgtcg
ctgcgctcctatgtgctggcggcccggctcgaggaggtcgcgctcgccggctcggtgcgg
ttgcgccggatgtcgggcgggcgttacgaattcgtgcattccgacaaggcgggcccgcgt
ggccgccgcggcgggctgggcctggacatccgcgacgactacaccggcgcggtccgcccg
gccaagaccctgtccggcggcgagaccttcatggcctccctggcgctggccctcggcctg
gccgacaccgtcgccgccgaatccggcggggtcgtgctggacaccctgttcatcgacgag
ggtttcggcagcctcgacgccgacaccctggacgccgtcatgggcgtcctcgacgaactg
cgggcgggcggccgggtggtcggcatcgtcagccacgtggacgagatgcgccagcgcatc
cccagccgcttgcacgtcatccgcggacgtgacggttcgcggctggagacgacggtcgcc
tga
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