Nocardia farcinica IFM 10152: NFA_50200
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Entry
NFA_50200 CDS
T00207
Name
(GenBank) putative formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
nfa
Nocardia farcinica IFM 10152
Pathway
nfa03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
nfa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
NFA_50200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nfa03400
]
NFA_50200
Enzymes [BR:
nfa01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
NFA_50200
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
NFA_50200
DNA repair and recombination proteins [BR:
nfa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
NFA_50200
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Zn_ribbon_TFIIB
Zn_ribbon_double
Ribosomal_S13
Cas12f1-like_TNB
Motif
Other DBs
NCBI-ProteinID:
BAD59872
NIH_Japan:
nfa50200
UniProt:
Q5YPL9
LinkDB
All DBs
Position
complement(5234919..5235788)
Genome browser
AA seq
289 aa
AA seq
DB search
MPELPEVEALAQFLREHAVGAVVGRVDVAALSAVKTFDPPVTALSGRDVSGAARWGKFLG
MDCSGLWLITHLSRGGWLRWIDEPNPNPPKPGGKSPLALRVHFFTPEGATPAFDLTEAGT
KKRLAVYVVDDPKLVPGIARLGPDALEVSEPQFAELLHGTSQRLKTALVDQALLAGIGNA
YSDEILHTAKISPFANTKTLPAEKIAELYAAMRAVLTDAVQRSVGQDAARLKGEKRSGMR
VHARTGQPCPVCGDTVREVSYAERSFQYCPTCQTGGKVLADRRMSRLLK
NT seq
870 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgagctacccgaagtggaggcgctggcccagttcctgcgcgaacacgccgtcggc
gcggtggtggggcgagtcgatgtggccgcgctgagcgcggtgaagaccttcgacccgccg
gtcaccgcgctgtccggccgcgacgtcagcggcgcggcacgctggggcaagttcctcggc
atggactgttcggggctgtggctgatcacgcatctgtcccgcggcggctggctgcgctgg
atcgacgaacccaacccgaatccacccaagcccggcggcaagagcccgctggcgctgcgg
gtgcacttcttcacccccgagggcgccacacccgcgttcgacctcaccgaggcgggcacc
aaaaagcgtctggccgtctacgtggtcgacgatcccaagctggtccccggtatcgcccgg
ctcgggcccgacgcgctcgaggtgagcgaaccccagttcgccgaactcctgcacggcacc
tcgcagcggctcaagaccgcgctggtggatcaggcgctgctcgcgggcatcggcaacgcc
tactccgacgagatcctgcacaccgccaagatctcgccgttcgccaacaccaagaccctg
cccgccgagaagatcgccgaactctacgcggcgatgcgcgccgtgctcaccgacgcggtg
cagcgctcggtggggcaggacgcggcccggctcaagggcgagaaacgctcgggcatgcgg
gtgcacgcccgcaccggccagccctgcccggtgtgcggggacaccgtgcgcgaggtctcc
tacgccgaacggtcgttccagtactgccccacctgccagaccggcgggaaggtgctcgcc
gaccggcgcatgtcgcggctgctcaagtga
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integrated database retrieval system
