Nocardia farcinica IFM 10152: NFA_50980
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Entry
NFA_50980 CDS
T00207
Symbol
rpoC
Name
(GenBank) putative RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
nfa
Nocardia farcinica IFM 10152
Pathway
nfa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nfa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NFA_50980 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nfa03021
]
NFA_50980 (rpoC)
03400 DNA repair and recombination proteins [BR:
nfa03400
]
NFA_50980 (rpoC)
Enzymes [BR:
nfa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NFA_50980 (rpoC)
Transcription machinery [BR:
nfa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NFA_50980 (rpoC)
DNA repair and recombination proteins [BR:
nfa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NFA_50980 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
BAD59950
NIH_Japan:
nfa50980
UniProt:
Q5YPE1
LinkDB
All DBs
Position
complement(5393708..5397661)
Genome browser
AA seq
1317 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITSVDEELRHNELSTLEAEMEVEKKAVADQRDADLEARAQKLEAD
LAELEAEGAKSDVRRKVKDGGEREMRQIRDRAQRELDRLDEIWNTFTKLAPKQLIVDEVL
YRELTDRYGEYFTGAMGAESIQKLMENFDIDAEAESLRETIRTGKGQKKLRALKRLKVVA
AFQANGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTRLEEGAKGEYR
PATADAPEFGVYSSPAEAQMAVDRGELTVRSKIKVRLTDQRPPKDVEAELFPEGWQRGDA
WTTETTLGRVLFNELLPADYPFINEPMPKKRQATIINDLAERYPMIVVAQTVDKLKDAGF
YWATRSGVTVSMSDVLVPPEKAEIMERYEAQSDQIEKKYQRGALDHQERNNALVKIWQEA
TEEVGKALRAHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSFR
EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCGTERGIVVPI
AEKQPDGSIIRDPHVETSTYARTLAADAVDANGNVIVAKGADLGDPALEALLEAGITEVK
VRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGVA
GDDITGGLPRVQELFEARVPKGKAPIAEVSGRVRLEDDDRFYKITIIPDDGGEEVVYDKL
SKRQRLRVFKHDDGTERLLSDGDHVEVGQQLLEGAADPHEVLRVMGPRQVQVHLVHEVQE
VYRSQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLTERAEFEAANRRVVAEGGEP
ASGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLIGLKENVIIGKLIPA
GTGINRYRNIQVQPTEEARAAAYAVPSYDDTYYSPDSFGSSTGAAVPLDDYGFSDYR
NT seq
3954 nt
NT seq
+upstream
nt +downstream
nt
gtgctagacgtcaacttcttcgatgaactccggatcggcctggccaccgccgacgacatc
cgccagtggtcctacggcgaggtgaagaagccggagaccatcaactaccgcacgctcaag
ccggagaaggacggcttgttctgcgagaagatcttcggtcccacccgggactgggagtgc
tactgcggcaagtacaagcgcgtgcgcttcaagggcatcatctgtgagcgctgtggcgtc
gaggtgacccgcgccaaggtgcgtcgtgagcggatgggccacatcgagctggccgccccc
gtcacccacatctggtacttcaagggcgtcccgtcgcgcctgggctacctgctggacctg
gcgccgaaggatctcgagaagatcatctacttcgccgcctacgtcatcacctcggtcgac
gaggagctgcgccacaacgagctctccaccctcgaggcggagatggaggtcgagaagaag
gctgtcgccgaccagcgcgacgccgacctcgaggcccgcgcgcagaagctcgaggccgac
ctggccgagctggaggccgagggcgccaagtccgacgtgcgccgcaaggtcaaggacggc
ggcgagcgcgagatgcgccagatccgcgaccgcgcccagcgtgagctggaccggctcgac
gagatctggaacaccttcaccaagctggcccccaagcagctcatcgtggacgaggtgctc
taccgcgagctcaccgaccgctacggcgagtacttcaccggcgccatgggtgcggagtcc
atccagaagctgatggagaacttcgacatcgacgccgaggccgagtcgctgcgcgagacc
atccgcaccggcaagggccagaagaagctgcgcgcgctcaagcggctcaaggtcgtcgcg
gccttccaggccaacggcaactcgccgatgggcatggtgctcgacgccgttccggtgatc
ccgccggagctgcgcccgatggtccagctcgacggtggccgcttcgccacctccgacctg
aacgacctgtaccgccgcgtcatcaaccgcaacaaccgcctcaagcgactgatcgacctc
ggcgcgcccgagatcatcgtcaacaacgagaagcggatgctgcaggagtcggtggacgcg
ctgttcgacaacggccgccgcggccgtccggtcaccggaccgggcaaccgtccgctcaag
tcgctgtcggatctgctcaagggcaagcagggccggttccgccagaacctgctcggcaag
cgtgtcgactactcgggccgttccgtcatcgtcgtcggcccgcagctcaagctgcaccag
tgcggtctgcccaagctgatggcgctcgagctgttcaagccgttcgtgatgaagcgcctg
gtcgacctgaaccacgcgcagaacatcaagtccgccaagcggatggtggagcggcagcgc
ccgcaggtgtgggacgtcctcgaagaggtcatcgccgagcacccggtgctgctcaaccgc
gcgcccaccctgcaccgcctgggtatccaggccttcgagccgcagctggtggaaggcaag
gccatccagctgcacccgctggtctgtgaggcgttcaacgccgacttcgacggtgaccag
atggccgtgcacctgccgctgtcggcggaggcgcaggccgaggcgcgcatcctgatgctg
tcgtcgaacaacatcctgtccccggcgtccggccgcccgctggccatgccgcgtctggac
atggtgaccggcctgtactacctgacccgcctggaagagggcgccaagggcgagtaccgt
ccggccaccgcggacgccccggagttcggcgtctactcctcgcccgccgaggcgcagatg
gccgtcgaccgcggcgagctgaccgtgcgctcgaagatcaaggtccgcctgaccgaccag
cgtccgcccaaggacgtcgaggcggagctgttccccgagggctggcagcgcggcgacgcg
tggaccaccgagaccacgctgggtcgggtgctgttcaacgaactgctgcccgcggactac
ccgttcatcaacgagccgatgccgaagaagcggcaggcgacgatcatcaacgatctcgcc
gagcggtacccgatgatcgtggtcgcccagaccgtcgacaagctcaaggacgccggcttc
tactgggccacgcgttcgggtgtcaccgtctccatgtccgacgtgctcgtgccgccggag
aaggcggagatcatggagcgctacgaggcgcagtcggatcagatcgagaagaagtaccag
cgtggtgcgctcgatcaccaggagcgcaacaacgccctggtcaagatctggcaggaggcg
accgaagaggtcggtaaggcgctgcgcgcgcactacccggccgacaacccgatcatcacg
atcgtcgactcgggcgccacgggtaacttcacccagacccgtaccctcgccggtatgaag
ggcctggtgacgaacccgaagggtgagttcatcccgcggccgatcaagtcctccttccgt
gagggcctgacggttctggagtacttcatcaacacccacggcgcgcgtaagggtctggcc
gacaccgcgctgcgtaccgccgactcgggctacctgacccgtcgtctggtggacgtctcg
caggacgtgatcgtgcgcgagcacgactgcggcaccgagcgcggcatcgtggtgccgatc
gcggagaagcagcccgacggctcgatcatccgcgacccgcacgtggagacctcgacctac
gccaggaccctggccgcggacgcggtcgacgcgaacggcaacgtcatcgtggccaagggt
gccgatctgggcgacccggcgctggaggcgctgctcgaggcgggcatcaccgaggtgaag
gtccgctccgtgctgacctgcaccaccggcaccggcgtctgcgcgacctgctacggccgc
tcgatggccaccggcaagctggtcgacatcggcgaggccgtcggcatcgtcgccgcccag
tccatcggtgagcccggtacccagctgaccatgcgtaccttccaccagggtggtgtcgcc
ggtgacgacatcaccggtggtctgccgcgtgtgcaggagctgttcgaggcccgcgtgccc
aagggcaaggccccgatcgcggaggtctcgggccgcgtgcggctcgaggacgacgaccgc
ttctacaagatcaccatcatcccggatgacggtggcgaggaagtcgtctacgacaagctc
tccaagcgtcagcgcctgcgcgtgttcaagcacgacgacggcaccgagcgactgctgtcc
gacggcgaccacgtcgaggtcggccagcagctgctggagggcgcggccgatccgcacgag
gtgctgcgcgtgatgggcccccgtcaggttcaggtccacctggtccacgaggtccaggag
gtctaccggagccagggtgtgtcgatccacgacaagcacatcgaggtcatcgtgcgccag
atgctgcgtcgcgtgacgatcatcgactcgggttcgacggagttcctgcccggctcgctc
accgagcgtgccgagttcgaggccgccaaccgccgggtcgtggccgagggcggcgagccc
gcctcgggtcgtccggtgctgatgggtatcaccaaggcgtcgctggccaccgattcgtgg
ctgtcggcggcgtcgttccaggagaccaccagggtcctgacggacgcggcgatcaactgc
cgctccgacaagctcatcggtctgaaggagaacgtgatcatcggcaagctgatcccggcc
ggtaccggtatcaaccgctaccgcaacatccaggttcagccgaccgaggaggcgcgtgcc
gcggcgtacgcggtgccgtcctacgacgacacctactacagcccggacagcttcggctcc
tccaccggcgccgcggtgccgctggacgactacgggttcagcgactaccgctga
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integrated database retrieval system
