Neodiprion fabricii: 124175034
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Entry
124175034 CDS
T08986
Name
(RefSeq) collagen alpha-1(IX) chain
KO
K06823
collagen type XVIII alpha
Organism
nfb
Neodiprion fabricii
Brite
KEGG Orthology (KO) [BR:
nfb00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
nfb04147
]
124175034
00535 Proteoglycans [BR:
nfb00535
]
124175034
00536 Glycosaminoglycan binding proteins [BR:
nfb00536
]
124175034
Exosome [BR:
nfb04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
124175034
Proteoglycans [BR:
nfb00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
124175034
Glycosaminoglycan binding proteins [BR:
nfb00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
124175034
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
124175034
NCBI-ProteinID:
XP_046410800
LinkDB
All DBs
Position
2:complement(25172209..25321407)
Genome browser
AA seq
1178 aa
AA seq
DB search
MWPSFSTLVILSAVFITVRNQAFDPFNEKNAMSWELLRSVMKAFPEGKFIQFTSGLDKLL
AYKLLPGSDIKRPHRLHLPDKLPKEFTLVASFKTLQRSGPSYLFAVLNPLDTVIQLGIKI
SDGPGTNQNVTLLYTNSDQHSLSDEIATFTVQRLVNKWTEIVFRVTTTDVTLYVNCHEFG
KQKVTRIPSELIFDTASKLYIAQAGPNIKGNFYGILQSLDLYQGTDPYLVKCNIGNDFHF
PDAEGGSGNDSDLASLVDVEHLFDKNEDDDDDDRQYPIIPPPPPPPNMDPRGQKGDKGDK
GEKGESVRGPPGPTGPPGPGYDGEQKGIVGPQGEPGEKGEPGTCSCNTTALMSSFTMPKM
MQGQKGETGASGAEGKQGLPGLPGAAGPPGERGQPGMKGPKGDMGITGADGVEGPQGRKG
EAGRDGVPGEKGATGPPGPPGKGEISGYDPSWKPRSMYRMEGITMRPGLPGHKGDPGTPG
ERGPKGETGVAGAKGVKGEMGLKGTKGDHGKDGSSGLQGFKGEPGSPGAPGVPGAPGANG
TPAEKGSKGDAGPEGKMGPTGPPGPPGPKSEGGINVGDIDPGEKGDKGDKGDQGFKGDFG
SKGEKGDRGDLGPAGIPGVNGIQGPQGNKGEPGKDGLPGSSGTPGTKGERGEKGPPGVTA
IAGPGDYVTIKGEKGARGRKGKQGSPGPAGPPGPAGKNGATGEIGLPGWMNGKGRPGPAG
IPGNPGGTGSKGDKGEPGAPSPYGLSVGVKGDKGDAGTPGTPGQPGRDGQRGPSGPPGPA
GPPSLGKYIPVPGPPGPPGPPGSPGLSFIGQKGEPGIRRGHIFMDRGDSRYGSRQGPRSS
LDEIKALRELKQLKELKEHYGSGTVSTRGPPESTTKIVPGAVTFQNTEAMTKMSAVSQVG
TLAYIIDEEALLVRVNNGWQYIALGSLLPITTPAPPTTAPPPIKPPFEISNLVNQILLKT
DGTGWYPKMLRMAALNEPITGDMHGIRGADYSCYRQSRRAGFRSSTFRAFLSSRVQNVDS
IVRFADRDLPIVNTKGDVLFNSWKEMFNGDGAYFSQSPRIYSFSGKNILTDFSWPEKVAW
HGSHKYGERAMDTYCDAWHTSSSDRYGLGSPLNGERLLEQIRYSCDSKFALLCVEVTTQT
SRRRRDVDNEEQFDVMEDDDVELSEEDYNRHLAELMEY
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atgtggcccagtttcagcactttggtcatcttatcggccgttttcatcaccgtgcgaaat
caggcgttcgatccattcaacgaaaaaaatgcgatgtcatgggaattgttgcggtcagtg
atgaaagcgttcccagaaggaaaattcatacaatttacttccgggttggacaagcttctg
gcctacaaacttttacccggatcggacatcaagagaccccacagacttcatttgccggac
aaattacccaaggaatttacgctcgtcgcctctttcaaaaccctccagcgtagtggaccc
agttatctcttcgccgtacttaatcctttagacaccgtcatccagctgggtatcaaaatt
tcggacggccccggaaccaatcagaacgtaacgctcctctacaccaactcagaccagcat
tctctgtccgacgagatagcgaccttcacggttcaacgtctggtcaataaatggactgaa
attgtcttcagagtcacgaccaccgacgtcacgctctatgtaaattgtcacgaattcggg
aagcagaaggtaaccagaattccgtcggagctcatcttcgacaccgctagtaagctgtac
atagcacaggctggtcccaacattaaaggaaacttttacgggattcttcagtcgctcgac
ttgtaccaaggaactgatccgtatttggttaaatgcaacatcggaaatgactttcatttc
ccagatgccgagggggggtcaggtaatgattcagatttagcctcattagtcgacgtggaa
catttattcgacaaaaacgaggatgacgatgatgacgacagacagtacccgatcattcct
ccacctccaccgccgccgaatatggatccgagggggcaaaagggggataagggagacaaa
ggggaaaaaggtgagagtgtcagaggtccaccaggacccacgggaccaccgggacctggc
tatgacggcgagcagaagggaattgttggccctcaaggtgaacctggagagaagggagag
cctggcacgtgttcgtgtaacacaactgccctcatgtcgtccttcacaatgccaaaaatg
atgcaggggcaaaagggtgagacgggtgcgtcgggggcagaaggaaaacaaggcttaccg
ggattgccgggcgccgcagggcctcctggtgaacggggccaaccgggtatgaagggcccc
aaaggcgacatgggcataacaggagctgatggagtggaaggtccgcaaggtcggaaggga
gaagcaggccgagacggtgttcctggagaaaagggggccacaggtcctccaggtcccccg
ggaaagggagagatttccggatacgaccctagctggaaacctaggagcatgtacaggatg
gaaggaataacgatgcgccccggacttcccggccacaaaggtgatcctggtactccagga
gaacgtgggcctaagggggaaactggggtggcgggtgcgaagggagtgaaaggcgaaatg
ggtctgaagggtacgaagggtgaccacggaaaggacggctcatcagggctccaaggattt
aagggagagcccggatcgcctggagcaccgggagttccaggagctccaggagcaaacggc
acgccagctgaaaagggaagcaaaggagacgctggtcccgaaggaaaaatgggacctacc
ggacctccagggcctccaggacccaagtcggaaggtggaataaacgttggtgatatagat
ccaggtgagaagggcgacaaaggagacaagggtgatcagggattcaagggtgatttcggc
tcgaagggtgagaagggtgaccgaggggatttgggtcccgccggtattcccggggtcaac
ggaatccagggtccccagggcaacaagggcgaaccaggaaaagacgggctgcccggatcc
agcgggactcccgggacgaagggcgaacggggtgagaaaggaccgccaggagtgacggcc
attgcgggtcctggggattacgtgaccatcaagggcgaaaagggcgctaggggaaggaag
gggaaacaaggatcgccgggaccggctggacctcctggacccgctgggaaaaatggcgcg
actggagaaattggactgccgggctggatgaatggaaagggtcggcctggtccagcagga
attcccggtaatccaggtgggacgggatccaagggtgataagggcgaaccaggcgctccg
agtccttacggactttccgttggggtcaaaggggacaaaggagatgccggaacacccggg
actcctggtcagccaggtcgggatggtcagcgcggtccttcaggaccacctggtcccgca
ggtccgccgtcgctaggaaaatacattccagttcctgggccaccaggacctccgggtccc
ccaggttcacccggattatctttcatcggccagaagggagaacctggcatcaggcgaggt
catatctttatggaccggggagacagccgttacggatctagacaaggaccgagaagcagt
ttggacgagataaaggctctccgagagcttaaacagctcaaggagctcaaagaacactac
ggatccggtaccgtgtcaacgcgaggtccaccggaaagtacaacaaaaattgttcctggt
gctgtgacattccaaaatacagaagccatgaccaagatgtcagcagtcagtcaagtcggc
acattggcgtacataattgacgaagaagctctgcttgtcagggtgaataacggatggcag
tacatcgctctcggatcgctcctaccaatcacaacgccagccccaccaacgacggctcca
cccccgataaaaccaccgttcgagatttcaaacttggtgaatcaaatcctgttgaagaca
gacggtacagggtggtacccgaaaatgctgcgaatggctgcactaaacgagccaattacc
ggtgacatgcatggaattcggggcgcggattattcctgctaccgacaatcgaggcgagct
ggcttcaggagcagcactttccgggcgtttttgagctcaagggtacaaaatgtggacagc
attgtcagattcgccgaccgagatctgccgatcgtgaataccaagggagacgtcctgttc
aattcctggaaggaaatgttcaatggagacggcgcctacttttcgcaaagcccgagaatc
tacagcttcagtggaaaaaatatccttacagatttctcttggcctgaaaaagtcgcttgg
cacggatcgcacaagtatggcgaaagggcgatggacacttactgcgatgcttggcataca
agtagctcggatcgttacggattgggttctccgttgaacggagagcggcttctggaacag
atccgatattcgtgcgatagtaaattcgctctattgtgcgtggaggtgactacacagacg
tctagacgtcgcagggatgttgataacgaagagcaatttgacgttatggaagatgacgat
gtagaattgtccgaagaagattacaacagacacttggcggaactgatggaatattaa
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integrated database retrieval system
