Neodiprion fabricii: 124175116
Help
Entry
124175116 CDS
T08986
Name
(RefSeq) collagen alpha-1(XI) chain-like isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
nfb
Neodiprion fabricii
Pathway
nfb04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
nfb00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
124175116
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
nfb00536
]
124175116
Glycosaminoglycan binding proteins [BR:
nfb00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
124175116
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Herpes_gI
Motif
Other DBs
NCBI-GeneID:
124175116
NCBI-ProteinID:
XP_046410985
LinkDB
All DBs
Position
2:complement(14652022..14663327)
Genome browser
AA seq
1774 aa
AA seq
DB search
MRVDYLSQPWTSLFCVRIAIFLSIMCLISKPVVTGITLQDIGIGTLDLMDVTGILQEPAG
VNVSMGRCDSSKGAYDISAAELLTVDTATLFPNEFPQDFSILVVTKQKPGIRDAAILTIY
SDFGDEQLMLSLGDDVTLRYGNLNVESVSFGVNVSNGEWHRLGLSIKGDAVTLIVDCSLQ
LTKELRRNLSIPISTSGIIIVGRQLTNTNVYTGEIELLKLAPNPDAAYEICTVFALNCGY
QHRRPPARTISHDTHIPGRIAGFASSSDYQSRFHESSSVEAFPTSNQQFSQSSNTDGSSF
EIYGVDRDQESMMERRGSAGSFVRQNSSASYDGSIDQEYEAEKDEDEDYIYAPIGPNTTL
GEPPTTISPPNDTFTEIEESTTEEYDTSESTNSGRTPHYSPTEKFDVYGYYTIPGPPGPR
GYPGPVGAPGLPGKKGEPGRDGLFGMQGAPGPPGHVFMIPMNQQGNDKGPDSQPEAFRQM
LSQHMMSMRGTEGPMGLTGIPGPEGPPGSQGQKGEPGYIGESGLRGERGLPGSPGREGRR
GRPGRDGDRGLTGPPGMRGEQGLPGLPGLPGDKGERGFQGGKGDQGLPGHEGMQGEDGVP
GLPGLPGELGPRGFIGPRGFPGLPGNPGIPGSEGAPGTKGNTGPAGQPGPPGQSGPMGPV
GAPGPQGVMGPTGLVGPHGKSGMPGLPGADGPPGHPGNPGMPGSKGEQGPQGPQGPIGFP
GNRGVKGDEGKRGAVGDRGDKGERGMEGEKGDLGTKGEPGQSGPQGIPGLEGLEGPKGFE
GPRGETGQPGLPGEKGKIGIPGFAGYPGNAGEKGDKGQAGRSGPAGDKGERGNTGMSGER
GEMGPRGFRGARGRRGSEGLPGPKGDTGQPGPPGLQGEAGPPGMEGPRGFIGLPGQQGLN
GKVGIPGAPGERGSAGKSGPPGPPGVPGVVGPPGPSGEPGPPGEPGTPGSPGLPGEPGMP
GEQGKEGPPGPMGPTGKEGSPGQSGLPGFPGERGMNGLPGIAGLKGEMGPLGPPGTTGDK
GAQGEPGKDGPPGSEGRQGPKGPPGAVGLKGEMGEPGLPGPTGRDGLPGLRGLPGPPGPV
GVPGEDGDKGDIGPPGEKGFKGSQGESGPAGPPGIQGMRGEPGPTGPSGEKGPPGEIGRQ
GSKGEEGPMGVPGPAGPIGLQGLPGPTGIKGDIGDDGPTGPVGPAGTPGEQGSRGPKGIE
GVQGPPGFEGRQGDKGDAGTPGPPGSPGIEGKPGERGAVGPKGEEGKAGPVGSPGGPGIN
GPEGPKGHAGAPGFPGPPGEPGIMGPKGEPGKDGDEGRPGEAGATGEMGSPGKEGEPGPP
GKPGPEGPAGMQGNTGLPGEKGDLGPPGAPGLQGRIGPQGEPGPQGSSGPRGLPGAAGEN
GPPGLSGAVGQPGKIGASGPRGPKGDRGRRGPKGHRGELGHIGIKGDQGEKGERGPKGPV
GPEGAKGAVGPQGLMGPKGNDGPQGLPGLEGPAGLKGMMGGEGTKGDAGPPGPPGPPGPP
AEQLMIPPELFLQRDEISGRKQRDVEPKNDKDDVQDNMKNHSEEELGPKFIDMYSSIYTM
RQELDRIRKPMGTRENPVRTCKDLFYGHPQFSDGWYWIDPNIGMPDDAVYVYCNISASGE
TCVFPDMHSSQMPNIPWRKENEHGDWYSNLRGGFRITYESIGVVQMNFLRLLSQEAYQNF
TYTCINSAGWYSVPGYNHDLALKLLGENEDKFSYGGTRPSVIVDGCKTRKSKSETVFVVA
TKKLKQLPLIDFYPIDYGLPHQAFGFSVGPVCFK
NT seq
5325 nt
NT seq
+upstream
nt +downstream
nt
atgcgagtcgactacctgtcgcagccatggacgtcgctgttctgcgtccggatagccatc
tttctctccatcatgtgtctcatctcgaaaccggtggtaaccggtatcactcttcaggac
atagggattggaactctagacttgatggatgtcaccgggatcctgcaggaacctgcagga
gttaatgtatccatgggacgatgtgattcgagcaagggagcatacgacatttcagcagcg
gaacttctaacagttgacactgcgacactatttccaaatgaatttcctcaagatttttca
attcttgtagtcaccaagcaaaaaccaggaatccgcgatgccgcgatactcacgatttac
agtgacttcggcgacgagcaactcatgttgtctctaggagacgatgtaactcttcgttac
ggtaatctcaatgtcgagagtgtttcatttggtgtaaatgtttcgaatggagaatggcat
cgtcttggattaagtatcaaaggggacgcagtcactttaattgttgattgtagccttcag
ttaacaaaagagttacgtagaaatctttccatacccattagtacatctggaataattatt
gttggccgacaattgacaaacacgaatgtgtatacgggagagatcgagcttttgaagctt
gctccaaacccagatgcagcctatgaaatctgtacagtttttgctctaaattgcggctac
caacatcgccgaccaccagctcgaacaatttcgcacgacactcatattcccggtcgtatt
gctggcttcgctagttcttcagactatcagtctagatttcacgaaagttcatctgtcgaa
gcgtttccgacttccaatcagcagtttagccaatctagcaacactgacggtagcagcttt
gagatatacggagtcgatagagaccaagaaagtatgatggaaaggagaggatcagcggga
agtttcgtccgacaaaattcatctgcatcttatgatggatcaattgatcaggaatacgag
gcggagaaagacgaagacgaggactacatttacgcccccatagggcctaacacaacccta
ggcgaacctccaactacaatatcaccgccgaatgatacgttcaccgaaattgaggaatcg
acaacagaagaatacgataccagcgagagcaccaattctggtagaacaccgcattattca
ccgaccgaaaaattcgatgtctacggttactacaccatccctgggccgccgggtccccgc
ggttatccaggaccagttggagcacctggattaccggggaagaagggtgaacctggaaga
gacggtctctttgggatgcaaggtgcaccaggacctccaggacacgttttcatgatacca
atgaaccaacaaggaaatgacaaggggccagattcacagcctgaagccttccggcagatg
ttgtctcagcatatgatgtccatgcgtggcactgaaggcccgatgggactgactggtatt
ccggggcccgagggaccacctggttctcaagggcaaaaaggtgaaccaggatatattggg
gaatcgggactgcggggcgaaagaggcttgcctggatcccccgggagggaaggacgacgc
gggcgtcctggaagagacggcgatagaggtcttactggtcccccgggaatgaggggagaa
caaggtttgccaggtctacctggtctccctggagataaaggtgagagaggctttcagggc
ggcaagggagatcaaggacttccagggcacgaaggaatgcagggggaggatggtgtacca
ggcctgccaggtttacctggagaactaggtcccagaggatttatcggtccgcgtgggttt
cccggactcccagggaaccctgggattcctggtagtgaaggagcacctgggaccaaaggt
aatactggccctgctggtcaacctggaccaccaggtcagtctggaccgatggggccagta
ggagctcctggtccacaaggagtaatggggcccactggtttagtgggtcctcatggaaaa
tccggaatgccgggactaccaggagcagatggtccccctggccatcctggaaatccaggg
atgccaggttcaaagggtgagcaaggtcctcaaggtccgcaaggaccaatcggattccca
ggcaaccgcggagtaaaaggtgacgaaggcaagagaggcgcagtcggggatcgaggtgac
aagggagaacgcggtatggaaggcgaaaagggagacttgggtacgaaaggtgagccagga
cagtctggacctcaaggtatacctggcctcgagggtctggaaggtcctaaagggtttgaa
ggaccacgaggcgaaacaggacaacctggacttcctggggaaaagggaaaaattggaata
cccggattcgctggttatcctggtaatgctggagagaagggagacaaagggcaggcgggt
aggtctggaccagctggagataagggtgaaaggggtaacaccggaatgtcaggcgagcgt
ggcgaaatgggcccaagaggattccgtggtgctcgcggtcggcggggatctgagggatta
cctggtcccaaaggggataccggtcaaccaggaccaccgggactccagggagaagctggt
cctccaggtatggaaggaccccgtggattcattggacttccgggtcagcaaggccttaat
ggcaaggttgggattcctggggcacctggagaacgtgggtctgctggaaaatctgggcca
ccgggaccgcctggtgtccccggtgtagttgggccacctggcccttctggagaacctgga
ccacctggagagcctggaactcctggaagtccaggcttgccaggagagcccggaatgccc
ggcgaacaaggcaaagaaggcccgcctggaccgatgggacctacagggaaagaaggatct
ccaggtcaaagtggactacctggttttcccggagaaaggggaatgaatggcttaccgggt
atagcaggcttgaaaggtgaaatgggacctctcggaccacctggtacaactggtgataaa
ggtgcacaaggtgagcctggcaaagatggcccacctggctcagaagggcggcaaggtccg
aaaggtccgcctggagcagttggcctcaagggtgaaatgggcgaacctggtttaccaggg
ccaaccggtcgagatggtttaccgggtttgcgaggtctgcctggccctccaggaccggtt
ggagttcctggtgaggacggagataaaggagatattgggcctcctggtgaaaaagggttc
aaaggttctcaaggagaaagtggcccagcaggtccgcctggtatacaaggaatgagaggc
gagcctggaccgacgggaccatccggcgaaaaaggacctccaggagaaatcggaaggcaa
ggaagtaaaggagaagaaggtcctatgggcgttcctggtccagcagggccaatcgggttg
cagggtttacctggaccaacaggtataaaaggagatataggagacgatgggcccacaggt
ccagtaggtccagctggaactcctggagaacaagggtcaagggggccaaagggaatagag
ggtgttcaaggacctcctggttttgagggtcgacaaggcgacaagggagatgcagggact
cctggacctccaggctcccctggtattgagggaaaaccgggtgagcgaggcgccgtaggc
ccgaagggtgaagaaggtaaggctggcccagttggatcaccaggaggacctggaatcaac
gggcctgagggtccgaaggggcacgcgggtgcaccaggatttccaggaccaccaggcgag
cctggcataatggggccaaaaggagagcctggtaaagacggagacgaaggtcggcctgga
gaagctggagcaacaggtgaaatgggatcacccggaaaagagggagagccaggaccgcca
ggaaaaccgggtcccgaagggccagcgggaatgcaaggcaacacaggattgccaggtgaa
aaaggagatctcggaccaccaggagcccctggtttacaaggacggattggaccacaaggt
gagccagggccacaagggtcatctggacctagaggactaccaggtgcagccggggaaaat
gggccgccaggtttgtcgggcgcagttggtcagcctggtaaaataggagcgtccggtccc
aggggaccaaaaggcgaccgtggacgccgagggccgaaaggccaccgtggtgaactcggg
catattggaattaagggagaccaaggcgaaaagggagaaagaggtccgaaagggccagtt
ggaccggagggtgcgaagggcgctgtaggtccacaaggtttgatgggaccaaaaggcaac
gatggtccccaaggtttgcctggcttggaaggtccagctggattaaaaggcatgatgggt
ggggaaggcacgaaaggagatgcaggtccgccaggtcccccaggaccacccggaccccca
gcagaacaactaatgattccaccggagctgtttttacagagggatgaaatttcgggtaga
aagcaaagagacgtcgaaccaaagaatgacaaggatgacgtccaggataacatgaagaat
cacagcgaggaagaattggggccaaaattcatcgatatgtacagttcgatatacactatg
cggcaagaattagatcgcatacgtaaaccaatgggtaccagggaaaatccagtgaggaca
tgcaaggatctgttttatggacatcctcaattttcagatggttggtactggattgatcca
aatattggaatgccggatgatgctgtatacgtttattgcaatatatcagcttcaggcgaa
acttgtgtgtttcccgacatgcacagcagtcaaatgccgaacattccgtggagaaaggaa
aacgaacacggcgactggtactcgaatcttcgcggaggtttcagaataacatacgagagc
attggtgtcgtccagatgaattttctacgactactgagccaagaagcatatcagaatttc
acctacacatgcataaacagcgctggatggtacagcgtacctggatataatcacgactta
gctctgaaacttcttggtgaaaatgaggataagttctcctacggtggaacacgacctagc
gtaatagttgacggatgtaaaactcgcaagagtaaaagtgaaacagtgtttgtagtagca
actaaaaaactaaaacaacttccgctaattgatttttatccaattgattacggtttacct
catcaagcctttggtttttcggtaggccccgtatgtttcaaataa
DBGET
integrated database retrieval system
