Neodiprion fabricii: 124177516
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Entry
124177516 CDS
T08986
Name
(RefSeq) collagen alpha-3(IX) chain-like isoform X1
KO
K08131
collagen type IX alpha
Organism
nfb
Neodiprion fabricii
Pathway
nfb04512
ECM-receptor interaction
nfb04518
Integrin signaling
nfb04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
nfb00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
124177516
04518 Integrin signaling
124177516
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
124177516
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
nfb00535
]
124177516
Proteoglycans [BR:
nfb00535
]
Extracellular matrix (ECM) proteoglycans
Others
124177516
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Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Laminin_G_2
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
124177516
NCBI-ProteinID:
XP_046415894
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All DBs
Position
3:16614111..16709216
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AA seq
977 aa
AA seq
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MPHAGRTERWKRALLLTSWSLTLLQSIQLTKAQYNVIEEEPGLEVAPAPCAGYKPGEDDL
QTFDFIRRYKLDLLDTQRPGVTRVRGSNRMQTAYRLDRDADLTLPTSDIFPSGLPEEFSL
ICTFKTRKWPNRPWHVVRILDVKTRPQFLITLNLKKRTLEFSIMNYDGKLQTVVFNNISV
FDRGWHKIHFGVFRQSVVLYVDCERGISQPLELRGPIDVNGKTSIAKVGNLRRTVPVDLQ
WMLLSCDPTRPQRETCDELPKIIPGPGNPPIPTGKPPQTCSITCPQGPPGYNGTQGSPGP
RGPIGRIGEPGLPGFPGPKGFPGLNGLPGPRGLTGPEGLPGPQGIIGPHGPPGSTGPKGD
RGDMGFAGLKGDRGEIGPPGFPGSPGPQGPPGNGSGETVQGPPGPVGPPGPQGAPGIRGF
TGERGDSGFPGQAGVPGERGLKGEPGDYGPPGPPGPQGLTGLPGTPGQPGNALIGGTVPG
APGLPGTPGADGLPGPTGQKGVKGDQGDRGEPGIRGDKGESGERGYPGSDGFPGELGKDG
IPGLPGPKGELGFPGPPGAQGSPGPPGTDGIPGIPGSKGLSGNPGIVGPEGPAGSPGEDG
LPGVKGESGAPGLPGIPGPVGPPGIDGTPGSDGLQGISGLPGEPGNPGPQGPTGPMGKSG
FPGPTGKPGEKGGNGQPGEQGPIGPRGTPGNSGSPGVPGQQGPPGLPGLEGRQGLPGPPG
PPGPPGDMLSTNSVFLDGAGSPGVSGPRGHPGTPGMPGERGAAGDRGPEGQMGPPGMPGK
EGAPGLPGPPGQRGQSGMPGIQGTPGRSYSDAEIRDICATVLRERLSELTDGLRGPPGMP
GLSRQGRPGRAGTQGIPGDPGPPGLPGERGFVGMPGPQGPTGPQGLQGERGDKGDRGPEG
IGMEGPPGLRGLPGPPGNDGVGLPGIQGDRGEAGRPGIPGMRGAPGAQGAPGFCELCKFP
TANYLQYSSQGTNKGPR
NT seq
2934 nt
NT seq
+upstream
nt +downstream
nt
atgccgcatgctgggaggacggaacggtggaaaagagcgctactcttgacatcgtggtca
ctcacactccttcagtcaatacaactcacgaaagcacaatataacgtgatcgaagaagag
cctggccttgaggtagccccggctccttgcgcgggctacaaaccgggcgaagatgatctt
caaacctttgatttcatcaggaggtataaattggacttgctggacactcaacgccccgga
gtaaccagagtcagaggaagtaatcgcatgcaaacggcgtacagattggacagggatgct
gatttgaccttaccaacaagtgatatttttccctccggattaccagaggaattcagttta
atatgtaccttcaaaacgcgaaagtggccaaaccggccatggcacgtagtgaggatactc
gatgtcaaaacacggccacaattcctgatcactttgaacctcaagaaacggactttagaa
ttctcgatcatgaattatgacggaaaactgcaaacagtagtcttcaataacatctccgtt
ttcgacagaggctggcacaagattcactttggcgtcttcaggcagagtgtggtcttgtac
gtagattgtgaaagaggcatttcacaaccattggagctgagaggacccatcgatgtcaac
gggaaaacttcaattgccaaagttggcaacttaagacggacagtacctgttgacttacaa
tggatgttactcagttgtgaccctacaagaccccagcgagaaacatgcgacgaattgccg
aagattatacccggccctggtaatccccccattcctacagggaaacctcctcaaacgtgt
tctatcacctgtccacaaggacctcctggctataacggcacacaggggtcacctggccca
cggggaccaattggccgcatcggagaaccaggccttccaggttttccgggcccaaaggga
tttccggggctcaatggattacccggacctcgaggtttgaccggtcctgaaggacttcct
ggtccccaaggtatcatcggccctcatggacctccagggagcactggacccaaaggtgat
cgcggagacatgggtttcgctggactcaagggagaccggggcgaaatcgggccaccgggt
tttccgggctctccgggacctcaaggacctcctggaaacgggagtggtgaaactgtgcag
ggtcccccggggccggttggaccacctgggcctcagggtgctccgggaattcgagggttc
actggggaacgaggcgattcggggtttcctggacaggctggagttccgggtgaacgaggc
ttgaagggcgaacctggagattacgggccgccgggacctccaggaccccaaggattaacg
ggtcttccaggaacaccaggccaacccgggaacgcattaatcggaggaacagttccggga
gctccaggattaccgggaacgccaggcgcagatggactacctggtcctactggacaaaag
ggggtcaaaggtgatcagggtgaccgtggcgaacctggaattcgaggtgacaaaggagaa
agtggcgaacgcggttatccgggatcagacggatttcctggagagttgggaaaagatggt
atcccaggccttccaggacccaaaggcgaattaggatttcctggaccaccgggtgctcaa
ggttctccaggacctccaggcacagatggaatcccaggaattccgggatcaaagggactt
tccggtaacccgggaattgtagggcctgaaggacctgcaggttctccgggtgaagacgga
ctaccaggggttaaaggagaaagtggagcaccaggcttacccggtatccctggtcctgtt
ggaccgcccggaattgacggaactcctggttctgacggactgcagggcatatccggattg
ccaggtgaaccgggaaatcctggccctcaaggtcccaccgggccaatgggaaagtcaggt
tttccagggccaacgggaaaacccggcgaaaaaggaggtaacggacaacccggagaacaa
gggcccattggaccccgtgggacaccaggaaattcaggcagtccaggcgtaccaggacaa
caagggcctcctggcttgccgggactcgaaggaagacaaggacttcctggtccgccggga
ccacctggacccccaggtgacatgttgagtacgaatagtgtctttcttgatggtgctgga
tctccgggtgtgagtggaccacgaggacaccctggcactccaggaatgccaggtgaaaga
ggtgccgcgggcgatcgaggaccggaaggacaaatgggtcctccagggatgcctgggaaa
gagggagctccaggactcccagggccaccaggacagagaggacagtcgggtatgcccgga
atccaagggactcccggaagaagttacagtgacgcggaaattcgtgatatttgtgcaact
gtactgagagagaggctgagcgaattaacagacgggctacgagggccacccggaatgccg
ggtctaagccgacaaggccgtcccggccgagccggaacccagggcatcccaggtgatcca
ggtcctccaggattgccaggagaacgcggttttgttggaatgccagggccacaaggtccc
actggtcctcagggactgcaaggggaaagaggtgacaagggtgaccgaggcccggaaggc
attggaatggaaggtccgcctggccttcgaggattgccaggtcctccaggaaatgatgga
gttggtttaccgggaatacagggagacagaggagaggcgggacgacctggtattcctggt
atgcgaggagctccgggtgctcagggagcgccaggattttgtgagctttgcaaatttcca
accgccaattacctacaatacagtagtcagggtacaaacaaaggacctcgttaa
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