Neodiprion fabricii: 124178898
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Entry
124178898 CDS
T08986
Name
(RefSeq) ATP-dependent RNA helicase dbp2-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
nfb
Neodiprion fabricii
Pathway
nfb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nfb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124178898
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nfb03041
]
124178898
03009 Ribosome biogenesis [BR:
nfb03009
]
124178898
Enzymes [BR:
nfb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
124178898
Spliceosome [BR:
nfb03041
]
Complex A
U1 snRNP components
U1 related factors
124178898
Complex B
124178898
Ribosome biogenesis [BR:
nfb03009
]
Eukaryotic type
Pre-60S particles
Helicases
124178898
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
SNF2-rel_dom
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
124178898
NCBI-ProteinID:
XP_046418637
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All DBs
Position
3:20078298..20085379
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AA seq
594 aa
AA seq
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MGRYRSRSRERDRRRKSRSRSRSRSPRDRRGWGGPGGGGGGGGPGRDRGGGGGGGRGGRG
QPGANLRKPRWDLSRLEPFKKDFYVPSDVVQHRDPRAVEQYRSDKEITLKGRNIPNPVFT
FEEAGFPDYVLKEVKRLGFKEPTSIQAQGWPIALSGRDMVGIASTGSGKTLSYILPAIVH
INSQPKLSRKDGPVALVLAPTRELAQQIQQVADDFGHSSGIRNTCLYGGAPKGAQARDLD
GGVEIVIATPGRLLDFLESGRTNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQT
LMWSATWPKEVKNLAEDFLKDYTQINVGSLQLAANHNILQIIDVCQDYEKENKLSTLLKE
IMAENENKTIVFIETKRRVDEITRKMKRDGWPAVCIHGDKTQQERDWVLQDFRSGKAPIL
VATDVAARGLDVEDVKFVINFDYPSCSEDYVHRIGRTGRRQKTGTAYTFFTPNNSNKAND
LIQVLKEANQVINPKLLELTDSRGGGSGGGGGIFGRHRGGRSRWRSKGGGSGAGGGGRGG
RDRSFSRSRSRSRSRERNGRGGGRRSYSRSYSRSRSPVNNRTEVIGKSYWSSER
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
atgggccgttatcgaagccgtagccgagaaagggataggaggcgcaaatctcgcagtcgg
tcccggagtcggtcacctagagatcgacgtggctgggggggacctggtggtggaggagga
ggaggaggtccaggacgcgacagagggggtggtggaggtggtggtcgcggaggcagagga
cagcctggggctaatctcagaaagccacgctgggacttaagccgtttagaaccattcaag
aaggacttctatgtgcctagtgatgtcgtacaacatagggatcctcgtgccgtcgaacag
tacagaagtgacaaagaaatcacccttaaaggaagaaacatacctaatcctgtattcacc
tttgaagaagcgggatttcctgattatgttctgaaagaagtcaagaggcttggattcaag
gagccgacatcaattcaagcccagggatggccaattgctctgagtgggcgggacatggtg
ggaatagcttcaactggatcaggaaaaacgttgtcttacatactgcccgccatagtacat
ataaatagccagcctaagttaagtcgcaaagacggtcctgtagctttagtcttggctccg
acacgagaattggctcaacaaatacagcaggtggctgacgactttggtcattcgtcaggc
atcaggaatacatgtttatatggaggtgcgccgaagggtgcgcaggctagggatcttgat
gggggtgtagaaattgtgatcgcaacacccggtagactattggactttttagaatccggt
cgaacaaacctgaaaagatgcacatatctagtactggacgaggctgatagaatgcttgac
atgggattcgagcctcaaattagaaaaatcatagaacaaattagacctgatagacagaca
cttatgtggtctgcaacatggcccaaagaggtaaagaatctggccgaagactttcttaag
gactacacgcaaataaacgttgggtctcttcagcttgcagctaatcacaatatccttcaa
attatcgacgtgtgtcaagattacgaaaaggaaaacaaacttagcacattgttgaaagag
ataatggctgagaatgagaacaaaacgatagtttttatagaaactaaacgcagagtggac
gagataactagaaaaatgaagcgtgacggctggcctgcagtctgtatacatggggacaaa
acgcaacaagaaagagactgggttttacaagattttcgatctggcaaagcaccgatacta
gtagccactgatgtagcagcacgaggtcttgacgtggaagacgttaagtttgtcatcaat
tttgactacccttcgtgttccgaggactacgtccacagaatcggccgaacaggtcgaagg
cagaagactggaactgcctacacctttttcactccaaacaattcaaacaaagcaaacgat
ttgattcaagtattgaaagaagctaatcaagttataaatcctaaactactggaactcact
gatagcagaggtggtggtagcggcggcggcggcggtatatttggaaggcatagaggagga
agaagcagatggcgttctaagggtggaggaagcggagcaggaggaggagggagaggtgga
agagatcgcagtttctccaggagtcgaagtcgcagtcgtagtcgtgagcgcaatggtcga
ggaggaggtcgtcggagctacagccgaagctactcccgcagtcgcagccccgtaaacaat
cgcacagaagttattggaaagagttactggagcagcgaaagatga
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