Neodiprion fabricii: 124180997
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Entry
124180997 CDS
T08986
Name
(RefSeq) PAN2-PAN3 deadenylation complex catalytic subunit PAN2 isoform X1
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
nfb
Neodiprion fabricii
Pathway
nfb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nfb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124180997
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nfb03019
]
124180997
Enzymes [BR:
nfb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
124180997
Messenger RNA biogenesis [BR:
nfb03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
124180997
mRNA degradation factors
3'-5' decay
Pan complex
124180997
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH_1
PAN2_N
RNase_T
UCH
zf-CCCH_2
DNA_pol_A_exo1
Motif
Other DBs
NCBI-GeneID:
124180997
NCBI-ProteinID:
XP_046423000
LinkDB
All DBs
Position
4:complement(1290069..1300736)
Genome browser
AA seq
1318 aa
AA seq
DB search
MDYSVLGHYDPSVEVVAGDQELIWEESNYDLSSEGFVPAAEQFGEEFAGAEFQETRTLLA
DGGDRFGVSTVTFDNAEELMWMGNQGGHVTSYYGPGLQKYTSFQVHASQEVRHIHPIDEG
ILVLTQSMLRCQLRRGIPIFTHTSSNMIDMQCMLQTSPARLLMGGHQKKIIDFNLTRGKE
TGLVHVGDHGCAILRQHSRLICAGNPAGRIDLRDPNTLSIEHTLDTHSGSLSDFDVQGNY
LVTCGFSNSRQGLSVDRFLMAYDLRQMRALTPCTTLVYPLLLKFLPSYSSRIAVVSPLGQ
MQLLDTIYANVQPSMTCLYQVATAGAMALSFDVSSTSQCLCFGDSAGSIHFLATNTPEPQ
FNTFSRPTEFADPVETLQPIAFDDNVTPLSTIPMVYSGQPLLSDWSEEYLKKVYRKTPPV
DPEILRTMKMQGTIGYAPNPQAFRRNQIPYNLEKRRGVASKLFAGDSRAKAEADGTFIAI
PKRYRKIEVKYSRLGYDEFDFDQYNRTSFCGLEATLPNSYCNAMLQLLYFSEPVRIALLS
HSCQREFCLSCELGFLFHMLDTSQGFPCQAANFLRAFRTVPEASALGLILSDLHPEAKRK
TSLIRLIQSWNRFILHQMHYEILETRKRVQEEEEAARLKAGPKNPPFVYNEQDFPSILQD
LGSRYRSHDEDRKKRRKQEEDGKYMWITSKDTTNCRKPTEETEIRNEETEISQLFGSEQI
HIHRCLKCGREASKRSIMLLCNLTYPEIINPPEEIPFTSVLGSSLRPEKITPAWCDNCQK
FTPTLQTRQLTKLPQILALNCGLDSQQDKAFWQNQMDLVVQRVINGKDASPARSPISVTI
KPCRYGANCTRIGCRFKHAGKDSDAVPPPATPPTATTPVPTPPSHLYYSHSWVPHHIEIA
LTSNGELSINKLDKITTTEPSLTTINTPVQKLAENGQGDNEVETSIPVFEKTVESMASEN
HKAELEGTPALSNKLEPSAVSGVKKIQYSLSAVVCHIDDKNDEDRRNIVALIRVAPSYHK
RSTGSAVSQWYIFNDFCISAVTPQEAVWFNLDWKVPCVLHYTTEPFPEVAPFISPLTSDV
FGEDKCIARSGGTRGITFTPLTSDEMPKKGELVAIDAEFVTLNQEESELRSDGKMSTIKP
SHMSVARITCIRGQGPLEGTPFIDDYISTQEQVVDYLTKFSGIQPGDLDANFSSKHLTTL
KSTYQKLRFLVDNGIIFVGHGLKNDFRVINLVVPPEQVIDTVLLFHLPHHRMVSLRFLTW
HFLGKKIQSETHDSTEDARAALELHRKYKELEAQGNLTETLKELYSVGTKLQWKVPDS
NT seq
3957 nt
NT seq
+upstream
nt +downstream
nt
atggactattcggttcttggccactacgatccttccgttgaggtcgtggcgggcgaccag
gagctgatctgggaagaatcaaactatgacttatcaagcgaggggtttgtgcctgcggcg
gaacagtttggcgaggaatttgcaggtgcggaattccaagagactagaaccttattggcc
gatggaggtgatagattcggtgtttccaccgtcacctttgacaatgccgaagaactcatg
tggatgggaaaccaagggggtcacgtgacatcttactacgggcctggcctccagaaatac
acgtcgtttcaagtgcatgcctcacaagaagtccgacatatccatccgattgacgaagga
atccttgtgctcacgcaaagtatgcttcgttgtcagctacggcgtggcataccgatattt
actcacacgtcctcaaacatgatagacatgcaatgcatgcttcaaacatcacctgcgaga
ctacttatgggaggtcatcaaaaaaaaattattgatttcaatctcaccagagggaaagaa
actggcctggtacacgtcggcgatcacggttgtgcaatattgagacagcacagccgtctc
atatgtgcaggcaatcctgctgggagaatagaccttcgggatccaaatactctgtcgata
gaacacactctagacacccacagtggctcactgagcgactttgatgtacaaggaaattat
ctagttacttgtggatttagcaatagccgccagggtctctcggtagatagatttctgatg
gcttacgacttgagacaaatgcgagcacttactccctgcacaactcttgtctatcctctc
ttactcaagtttcttccgagctactcgagtcggattgctgttgtgtcgcccttgggacag
atgcagcttctggatacaatctacgccaatgttcaaccatccatgacttgtttgtaccaa
gtggccactgccggtgctatggcactgtcctttgacgtgtcatctacgtcacaatgtctt
tgcttcggtgattcagctggatcgattcatttcctagccaccaacacaccagaaccacaa
ttcaacactttctccagacccaccgagtttgctgacccagtcgaaacgctgcagcctatc
gcatttgacgacaatgttacgcctctcagtacgatacctatggtgtactctggacaacct
ttgctaagcgattggtccgaagaatatctcaaaaaagtttacagaaaaacaccgcctgtc
gacccagaaattttacgcacaatgaaaatgcaagggactataggatacgcgccgaatcct
caggccttccgcagaaaccaaatcccctacaatttggaaaaacgacgtggcgtagctagt
aaactattcgcaggggattctcgcgccaaggcggaagcagatggcacgtttattgccata
cctaaacgttatcgtaaaattgaagtgaaatactctaggcttggatacgacgagtttgat
tttgaccagtacaatcgcaccagcttttgcggcttggaagcaaccctaccaaatagttat
tgcaatgctatgctccagctcctttacttcagcgaaccggtgagaatagctcttttatcg
cactcttgtcaaagagagttctgcctctcgtgcgaactgggctttctctttcacatgttg
gatacgtctcagggctttccttgtcaggcggcaaattttcttagagcttttagaacggtt
cccgaggcttcggcacttggattaatactcagtgatctgcatccggaagctaagagaaaa
acaagtctgatacggcttattcagagctggaacaggttcattctacatcaaatgcactac
gaaattctggagacacggaaacgcgttcaggaagaagaggaggctgcccgtctcaaagct
ggacctaaaaatccaccatttgtttacaatgaacaggattttcccagcattcttcaagat
ctgggttctcgatacaggagtcatgacgaggataggaaaaagagaaggaagcaagaggag
gatggtaaatatatgtggattacatcgaaagatacaacgaattgcagaaaaccaacagaa
gaaacggaaattcgaaacgaagaaactgaaatcagccaactatttggttccgagcaaatt
catattcatcgatgcctaaagtgcggacgggaggcatcgaagcgctccatcatgctgttg
tgcaacttgacttatccagaaatcataaatcctccagaggagattccattcacatcagtt
ttaggaagtagcttgagaccggagaaaattactccagcttggtgtgacaactgtcaaaag
ttcacgccgacgctgcaaactagacaattgacaaaactgccccaaattctggctcttaat
tgcggtttggacagtcaacaggataaagccttttggcagaaccaaatggatcttgttgta
cagagagtcattaatgggaaagatgctagcccagctcgcagtccgatatctgtaaccata
aagccgtgtcgttacggtgcaaactgtacgagaattggttgtcgattcaaacacgcagga
aaagattcagatgctgtaccaccgccagcgacaccaccaacagcgacaacgcctgtacca
acgccaccaagccacctatattattctcactcatgggttcctcaccacattgaaatagcg
ctaacttcaaacggagaactgtcaataaataagctcgacaaaataactaccactgaaccc
agcctgaccaccattaatactcctgtacaaaagttagctgaaaacggccagggtgacaat
gaagttgagacgagtatacctgtttttgagaaaacagtggagagcatggcgagcgagaac
cacaaagccgaacttgaaggcaccccggctctcagcaataagttggaaccttcagctgtc
agcggtgttaaaaaaatacagtacagtctcagtgctgtagtctgtcacatagacgacaaa
aacgacgaagatcgaagaaacatcgttgctctaatacgcgttgctccaagctaccacaaa
cgatcgactggcagtgcagtgtctcagtggtacatctttaatgatttctgcatatctgca
gtgacgcctcaggaagctgtctggttcaatctcgattggaaagtaccttgcgtcctccat
tacaccacagagccgttcccagaagtagcgccctttatcagtccgcttacatcagacgtg
tttggtgaggacaagtgcattgctcgtagcggaggaacgaggggtattactttcacaccg
ttaacgtcagatgagatgccaaagaaaggagaattggtggcgatagacgctgaattcgta
actctaaatcaggaagaatctgagctgagaagcgacgggaaaatgtcgacaatcaaaccg
agtcatatgtccgttgcacgaataacttgtatacgcggtcaaggaccattggaggggacc
ccgttcatagatgactacattagcactcaagaacaagtagttgattatttgacaaagttc
agtggaatacaaccgggagatttggacgctaatttcagcagtaagcacttgaccacgctg
aaatcaacctatcaaaaattgcgatttttagtagacaatggaataatattcgtcggtcat
gggttgaagaacgatttcagggtaataaacctggtcgtgccaccggaacaagtaatcgac
accgtattgctctttcatttacctcaccatcgtatggtgtccctgcggtttcttacctgg
catttccttggtaagaaaatacaatcggaaacgcacgattcaacggaggatgcacgcgct
gccctagagttgcatcgaaaatataaagagcttgaggcacagggaaacctgacggaaact
ctgaaagaattatacagcgttggcaccaagctacaatggaaggttccagatagctga
DBGET
integrated database retrieval system
