Neodiprion fabricii: 124181679
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Entry
124181679 CDS
T08986
Name
(RefSeq) 5'-3' exoribonuclease 1 isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
nfb
Neodiprion fabricii
Pathway
nfb03008
Ribosome biogenesis in eukaryotes
nfb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nfb00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
124181679
09123 Folding, sorting and degradation
03018 RNA degradation
124181679
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nfb03019
]
124181679
03009 Ribosome biogenesis [BR:
nfb03009
]
124181679
03016 Transfer RNA biogenesis [BR:
nfb03016
]
124181679
03036 Chromosome and associated proteins [BR:
nfb03036
]
124181679
Messenger RNA biogenesis [BR:
nfb03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
124181679
mRNA degradation factors
5'-3' decay
5' exonucleases
124181679
Ribosome biogenesis [BR:
nfb03009
]
Eukaryotic type
Pre-60S particles
RNases
124181679
Transfer RNA biogenesis [BR:
nfb03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
124181679
Chromosome and associated proteins [BR:
nfb03036
]
Eukaryotic type
Gene silencing
piRNA pathway
124181679
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Dicer_dimer
dsrm
Motif
Other DBs
NCBI-GeneID:
124181679
NCBI-ProteinID:
XP_046424411
LinkDB
All DBs
Position
4:42231209..42250466
Genome browser
AA seq
1681 aa
AA seq
DB search
MGVPKFFRYMSERYPCLSEVVREYQIPEYDNLYLDMNGIIHICSHPNDLDPHFRISEEKI
FRDIFHYIEILFHMIQPQKLFFMAVDGVAPRAKMNQQRGRRFRSAKEAEVLEAKAKERGE
VLPKEARFDSNCITPGTVFMTRLNEQLKYFVTYKITTDKLWQKCKVILSGHETPGEGEHK
IMDYIRYIKSQSNYDSNTRHCLYGLDADLIMLGLCTHEPHFSLLREEIKFGNKQKRVSTP
EETTFFLLHLSVMREYIEHEFSSLKDKLSFDYDIEKIIDDWVLMGFLVGNDFIPNLPNLH
IANGALPILYLAYMEVLPTLDGYINEGGTLKLDRFEKLMERLSRVDIEQFAEHYADLKYF
ESKTGRRPNETERHTYHNSEDASEASAKNPGNKDLEDLIKSTYNMFSGHSDEEEPLDMDD
DSDNDVYNMEFIQHKRDYYMNKLEYENVDADVLKSQAECYVRAIQWNLNYYYNGCCSWSW
YYPHHYAPYISDIKGFKDLKLEFDMGRPFLPFQQLLAVLPAASRSLLPKPFESLMIGEQS
PIIDYYPAEFKTDLNGKRQEWEAVVLIPFIEETSLLEAMEPCYAKLTPDEKQRNSHGPMY
VYYHTTEDLGLYEAPQYFPKLSTNHAKLKLIKWEDIIVPREKLVKGLCPGIRLDVYFPGF
PTLKHINHTAELRKAKVKVFEQVSRGENMILQIVPSDARNLADLAGQILGTSIFVSWPHL
VEARVVAVSNREVKYTLSADRNETIVKEEMRGPLSVQWNQSKRAISENYMNRLGIDVGET
DVLVHACLMTGRRYIFGTQGKLSLEKQWSDVPSAFALQATVGDIAVHDSSFVQYKNIGEV
FTPKSICFMLGHPHYGAMGEVSEGGTSTKTGRVKLAMWITEEPNLDLLKQSQSDAKSRYM
HGSIAAQRLGINSHLLSRITGSIYVMQGPREQLENPKRNLGLNLKFNKKNQEVPGYTKKV
NGQWLYSTKAIDLIRAYMRKFPLLFEKLASNVTNDIYYEDELFTEPECMTVSAVSSWLKE
QPFYNIESCNCGTESLDFEDIEEIERVVDAFIESQKNSPTGKTVMMQVKPHLLFKPSLHM
GNFPPDATAQHKIYDRIVSVRESFTVPLGYRGTIFAIQRTEKISDLMYDIVFDKEFVGGL
SLNMCSANRGYRLAPSDFINLSHGFRAENVKSGKSNVDTSEPSSWRSPSNSRNHTSRSNT
SAFALFNSQGGLAPAFVKGEMQFPVSPMKIMKKNSDQTQLNHKITAETNVQDNVNAQSKA
RGAVSQEQSNSKVENETAQIVQDGKGQSLQRSSEFQALWNELHRLQKSSGSNSQQKLPMT
PNTESKETPSTVTNSPREAHLWPQDPSAFLKAMLKISDDNSKNNTASSNKPPAFPQLSKS
SDAPPLVQQLFDHARQVENTKKSNTVSYCSQLLTYFQLKGMGMPRYSYSPNKETNFVCAR
IFLPNGRTFAGEFCQSRELAAESAAKRAYTELDLNNIPDPGVNILPTPPQQWYNTRHRAI
HPQNIRPIINGPPPMPPMMVPNPFMSVFNGSSNVPQSPNNSSLLPTFSQTRPQQRPHPGT
GNSSKNWRTENNKSEQRKTAAFVPLQAQKQHRSANPRNITGTANLIDNLHRKQQERKETE
TNEETTSKVTGSKTTDTPRPQNIQNGLQNSLKHQQKSAKQRRSRIAANFGSVSVANGAGS
K
NT seq
5046 nt
NT seq
+upstream
nt +downstream
nt
atgggcgtgccaaaattcttcaggtatatgagcgaaagatatccatgcctcagcgaggtt
gtcagggaatatcagatacctgaatatgacaacttatacttggatatgaatggcattatt
cacatatgttctcatccgaatgacttggatccccacttccgtatatcggaagaaaaaata
tttcgggacatatttcattatattgaaatattgtttcacatgattcaaccacaaaagcta
ttttttatggcggtcgacggtgtagcaccacgtgctaagatgaatcaacaaaggggccgc
agatttcgctcggctaaagaagctgaggttttagaagccaaagcgaaggaaaggggcgaa
gtacttccgaaggaggcacgatttgactccaactgtataacaccaggaactgtattcatg
acacgtcttaatgagcaactcaaatattttgtcacctacaaaataacaacggacaaactt
tggcagaagtgcaaagtgatactgagcggacatgagacaccaggtgaaggagagcacaaa
atcatggattacattagatatattaaatctcaatcgaattacgacagtaacacaaggcac
tgcttgtacggtttggatgctgatctcataatgctgggtctgtgcacgcacgaacctcat
ttctccttgctgagggaagaaataaagtttggaaataaacagaagcgagtgtccacgcct
gaggaaaccacattttttcttcttcatttgtcagtaatgcgagaatatatcgaacacgag
ttctcttcacttaaggataaactttcatttgactatgacattgagaaaattatcgatgac
tgggtactaatgggtttcctggttggaaacgattttattccaaatttgccaaatttacat
atcgctaacggtgccctgccaattttatacttggcttacatggaagtgctgcctaccctg
gacgggtacataaacgagggcggtactttgaagttggatcgctttgaaaaattaatggaa
cgtctaagtcgggtggatattgaacaatttgcagagcattatgctgatttaaaatatttc
gaatccaagaccggtcgaaggccaaatgaaacggaaaggcacacttatcacaattctgaa
gatgcgtcagaagcctcagcaaaaaatccgggaaataaagatttggaagatttaattaaa
tctacctacaatatgttttcgggccattctgatgaagaagaaccattagacatggatgac
gattcggataacgacgtttataacatggaatttatccaacacaagcgtgactattatatg
aacaagttggaatatgaaaatgtcgatgcagatgtattgaaatcgcaagcggaatgttac
gtcagagcgattcagtggaatctgaattattattacaacgggtgttgcagttggtcgtgg
tattatccgcatcactacgcgccatatatttccgatataaagggtttcaaagacttgaaa
ttggaatttgacatgggccgaccatttttaccttttcaacagctattggcagtattgcca
gcggccagtagatcattactgccaaaaccctttgaatcgttaatgattggcgaacagtca
ccgatcatagattactatccagctgaattcaaaactgacttgaatgggaaacggcaagag
tgggaggctgtcgtccttattccattcatcgaagaaacaagtttattggaagcaatggag
ccgtgttacgctaagctaacacctgatgagaaacaacgaaattcccatgggccgatgtac
gtttattaccataccacagaagatttgggtttatacgaagctcctcagtattttcctaaa
ttatctacaaatcacgcaaagcttaaactaatcaagtgggaagatattattgtaccaaga
gaaaaactagtaaagggattatgtccaggcataagactggatgtttacttcccaggattt
ccaacgttgaagcacattaatcacacagctgaattacgcaaagccaaggtgaaagttttc
gaacaagtgtcacgaggtgaaaatatgatactacaaatcgtgccatccgatgcacgaaac
ttggctgacctggccggccaaatactagggacgagtatttttgtttcttggccgcatttg
gtcgaggcacgtgttgtggctgtatccaatcgtgaggtgaaatacactttgtcagctgat
cgaaatgaaactatagtaaaagaagagatgagagggcctctatccgtccaatggaaccag
tcaaagagggcgattagcgaaaattacatgaaccggttgggaattgatgtaggagagacg
gatgttttagtgcatgcgtgcttgatgacgggtagacgttatatttttggcactcaagga
aaattgtccttggaaaaacaatggagcgacgtaccgtcagctttcgcacttcaggcaacc
gtcggtgatatagccgtacacgattctagctttgtacagtacaaaaacattggggaagta
tttacaccaaagagcatatgttttatgctgggacacccgcattacggagctatgggcgag
gtctcggaaggtggtactagtacgaaaactggcagagtcaagttagccatgtggatcacc
gaggagccaaacttggatttgttaaaacaatcacaatcagacgcaaaatcgcgctacatg
cacggcagtatagcggctcaaagactgggaattaatagccacttgctgagccgcatcacc
ggttctatctacgtcatgcaagggccaagagagcaattagaaaatccgaagcgtaacttg
ggactcaacttgaaatttaacaaaaaaaaccaagaggtgccaggttatacgaaaaaagtt
aacggccagtggttatatagtacaaaggctatcgacttgatacgtgcttacatgcgaaaa
tttcctttgttatttgaaaaactggcaagtaacgtgacaaatgacatctactacgaggat
gagttgtttacagaaccggagtgtatgacggtgagtgctgtatcatcttggttgaaggaa
caaccgttttacaacatcgaaagctgcaactgcgggactgagagtctggattttgaagat
attgaggaaatagaaagagtggtggatgcatttattgaatcccaaaaaaattccccaacc
gggaagaccgtaatgatgcaagtcaagccacatttattgttcaagcctagtcttcacatg
ggtaacttccctcccgatgcaactgcgcaacacaaaatttatgacaggattgtcagtgtc
agagaaagtttcaccgtgcctcttggatatagaggtacaatttttgcaatacagagaaca
gaaaagatttctgatttaatgtacgacattgtattcgacaaggaattcgtaggaggttta
tcattgaatatgtgctcagccaatcgcggttataggctagctccttcagatttcataaac
ttgtcccatggttttcgagctgagaatgtcaagtcaggcaaatcgaatgtggacacatcc
gaaccgtcatcgtggaggtcgccttcgaattcccgaaatcatacctctcgttcgaatacg
agtgcctttgccttgttcaacagccagggtggccttgccccagcctttgtcaagggtgaa
atgcagtttcctgtatcaccgatgaaaataatgaaaaaaaacagtgatcaaacacaactc
aaccacaaaattaccgccgagacaaatgtccaggacaatgtcaacgcacagagcaaagca
cggggagcggtatcgcaggagcaatcaaattctaaggttgaaaatgaaacagcacagatt
gtacaggatggtaagggtcaatctttacaaagatcatcagagtttcaagctctgtggaac
gagttacatcggttacagaagtccagtggttcaaacagtcagcagaaattaccaatgaca
ccaaataccgaatcgaaggaaacgccgagtactgtgaccaattcgccaagggaagctcac
ctttggcctcaagatcccagtgcttttttgaaagcgatgttaaaaatctcagatgataat
tcgaaaaacaatactgcatcatccaacaaacctcctgcattcccacaattatctaaatct
tcagatgcaccacctctggtacaacagttattcgatcatgccagacaagtggaaaatact
aaaaaatcgaatacagtatcctattgttcgcaactgttgacatactttcaactaaaaggt
atgggcatgcctcgctacagttattcaccgaacaaagagactaacttcgtatgcgcacgt
atcttcttacccaatggaagaacgttcgctggtgagttctgtcagagcagggaactcgcc
gctgaaagtgccgctaagagagcgtatacggaattggatttgaacaatataccagaccca
ggtgtcaatatattacctacgcctcctcagcagtggtacaacactcgtcacagggcaata
catccacaaaatattcgaccaatcataaacggtccacctccaatgccaccaatgatggtg
ccgaatccgtttatgagcgtattcaatggtagttcaaatgtaccgcaaagtccaaataat
tcgagtttgttgccaacattttctcagaccagacctcagcaaagacctcatcctggtact
ggaaatagttccaagaattggagaaccgaaaataacaagtctgagcagagaaaaactgcc
gcttttgtaccgctacaagcacagaaacagcatcgcagtgcaaacccaagaaatataacc
ggtactgcaaacttgattgacaacttgcaccgcaagcaacaagagaggaaagaaactgaa
actaatgaagaaaccacatcaaaggtaaccgggtcaaaaacaacagacactccaaggcca
caaaatatacaaaatgggctccagaattcactgaaacatcaacaaaaatcggcaaagcag
aggagatcgcgaattgctgccaattttggctctgtttcagttgctaatggagccggatca
aaataa
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