Neodiprion fabricii: 124182145
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Entry
124182145 CDS
T08986
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
nfb
Neodiprion fabricii
Brite
KEGG Orthology (KO) [BR:
nfb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nfb03016
]
124182145
Enzymes [BR:
nfb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
124182145
Transfer RNA biogenesis [BR:
nfb03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
124182145
Prokaryotic type
tRNA splicing ligases
124182145
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
124182145
NCBI-ProteinID:
XP_046424974
LinkDB
All DBs
Position
5:9448221..9452633
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AA seq
506 aa
AA seq
DB search
MVVRQYQEELKYLEKINDYCWRIKKGFQPNMNVEGIFYVNNTLERLMLEELRNSCRPGMV
GGFLPGVKQIANVAALPGIVGRSVGLPDVHSGYGFAIGNMAAFDMNDPKSIVSPGGVGFD
INCGVRLLRTNLFEKDVQPIKEQLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWS
LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQVVEEIYD
KWAASKMGIEDKGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACAHIH
STEGQDYLKSMAAAANFAWVNRSSMTFLSRQAFAKQFHMSPDDLDMHVIYDVSHNIAKVE
EHIVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEEGM
KETFGSTCHGAGRALSRAKARRNLDYKDVLAKLEQSGISIRVASPNLVMEEAPESYKNVT
DVVNTCHAAGISRKCIKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggttgtccgtcagtatcaggaagaattgaagtacctagaaaaaatcaacgattactgc
tggagaattaaaaaggggtttcagccaaatatgaatgtcgaaggtatattctatgtaaac
aataccctggaacgtctaatgctagaagaattacgcaattcctgccgacctggtatggta
ggtggatttctaccaggagtaaagcaaattgctaatgtggctgctttacctggcattgta
gggaggtctgtcggattaccagatgttcattccggatatggatttgccatcggcaatatg
gcggcattcgacatgaatgatcccaaatcaatagtctcccctggaggtgtaggatttgac
ataaactgtggcgtaaggctccttaggactaatttatttgagaaggatgtccagcctata
aaagaacaactagctcaaagcatgttcgatcacatacctgttggtgtcggatcaaaagga
atcatacccatgaatgccagggatttggaagaggccttagaaatgggaatggattggtct
cttcgtgaaggctatatttgggcagaggataaagaacactgcgaggaatatggtcgtatg
ctcaatgcagatccttcaaaagtgtcaatgagagctaagaaacgtggtctgccacagttg
ggtacgctgggtgcaggaaaccattatgcggaaattcaagtagtcgaagaaatctatgat
aaatgggcagctagcaaaatgggtattgaagacaaagggcaagtttgtgtcatgattcat
tctggcagcagaggatttggacatcaagttgctactgatgctcttgtacaaatggagaag
gctatgaagcgcgataacatcgaaacaaacgatcggcagttggcatgtgcacatattcat
tcaactgagggacaagactatttaaagtcaatggctgcagcagcaaattttgcttgggtt
aatcgtagttctatgacatttcttagtagacaggcgttcgcaaaacagtttcacatgtca
cctgatgacttggacatgcatgtaatttatgatgtatcccataacattgccaaagttgaa
gaacacattgttgatggcaaacagaaaactttactagttcatagaaagggttcaacacgt
gctttcccacctcaccatccgctcattccagttgattatcagttgacgggacaacctgta
ttgatcggaggtaccatggggacatgtagttatgttctcacaggaactgaagaaggcatg
aaagaaacttttgggtcaacatgtcacggagcgggccgcgcattatcgcgtgcaaaggca
cgacgaaacttggattacaaagacgtattagccaaactggaacaatctggcatatcgatc
agggttgcatcaccgaatttggtcatggaggaggctcctgaatcttataaaaatgtgact
gatgtagttaacacatgtcacgcggccggaatatcccgaaaatgcattaaactgaggcct
attgctgtcataaaagggtaa
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