Neodiprion fabricii: 124182689
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Entry
124182689 CDS
T08986
Name
(RefSeq) 5'-3' exoribonuclease 2 homolog isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
nfb
Neodiprion fabricii
Pathway
nfb03008
Ribosome biogenesis in eukaryotes
nfb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nfb00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
124182689
09123 Folding, sorting and degradation
03018 RNA degradation
124182689
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nfb03021
]
124182689
03019 Messenger RNA biogenesis [BR:
nfb03019
]
124182689
03009 Ribosome biogenesis [BR:
nfb03009
]
124182689
03016 Transfer RNA biogenesis [BR:
nfb03016
]
124182689
Transcription machinery [BR:
nfb03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
124182689
Messenger RNA biogenesis [BR:
nfb03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
124182689
Ribosome biogenesis [BR:
nfb03009
]
Eukaryotic type
Pre-60S particles
RNases
124182689
Transfer RNA biogenesis [BR:
nfb03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
124182689
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC_4
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
124182689
NCBI-ProteinID:
XP_046426215
LinkDB
All DBs
Position
5:17385285..17424853
Genome browser
AA seq
980 aa
AA seq
DB search
MGVPAFFRWLTRKYPSVIVECIEQKATTTNGVRVPVNSADPNPNGVEFDNLYLDMNGIIH
PCTHPEDKPAPKNEDEMMDAIFECIDRLFAIVRPRKLLYMAIDGVAPRAKMNQQRSRRFR
ASKETTEKITEISRIRSELALKGAFLPPEKPKGDHFDSNCITPGTPFMARLSACLHYYIH
ERLNNDPGWRGIKVILSDANVPGEGEHKIMDYIRKQRSQPDHDPNTQHVLCGADADLIML
GLATHEPNFTIIREEFKPNKPRPCDICGQLGHEMKDCTGSEPVAKEEENMFGSECQFIFV
RLNVLREYLERELQMPNLPFKYDFERAIDDWVFMCFFVGNDFLPHLPSLEIREGAIDRLV
NLYKKTVYKTGGFLTDSGDVNLDRVQMIMSDLGNVEDEIFKKRQQNELSFKQREKNKKKR
LEAISNYKPNWVPAGQFAPTPLGQATQPVQNARHEAFQMRMQGRNYNTSATERALKGTNA
TNALESMLLPEGSGNRGQKRKTDNVTTEEADDDQAHDEVRLWEDGFKDRYYESKFDVSKD
NLAFRNNVALQYVRGLCWVLRYYYQGCASWKWYFPYHYAPFASDFINIGGLSTEFEKDTV
PFRPLEQLMGVFPAASSSHVPPPWAKLMSDPKSPIIDFYPEDFKIDLNGKKFAWQGVALL
PFVDEKRLFKALEPYYSCLSEAEKKRNVRGDDRLYVSLDNKSYDFITGLYKNKVDSDVET
NICVDGMRGTVLLAEDCIGDGATLNSPIGGLPVRDNRVYCVRFRDPKYQKDFIFPAKKLK
GAKEPPKVLKPQDFEQMNRASGGGGGNQWRPQIGFTPSTQRATLGDAGHRMLGHHRSNNG
PGQYAYVPPPQVGYHQNRGYQSGYHSGSSNSGSSGGYGSVTSGSARGGNGGGGRGNYNQN
PQAGVWASGYVAHQSNYHQRNQHHNQHSHQQHNRPHPYQNKSHNSYSNPQWNHSQNRRGG
GGGGGGGGGSGGGGGGWRGR
NT seq
2943 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtaccggcattctttcgttggctcactcgaaaatatccgtcagttatagtggaa
tgcatcgagcaaaaggcaaccacaacaaacggggtccgtgtacccgtcaattccgccgat
cctaaccccaacggggtagaatttgacaatttatatcttgatatgaatggtattattcat
ccatgcacgcatcctgaggataagccagctccaaaaaatgaagacgaaatgatggatgct
atttttgaatgcatagatagattatttgctattgtacgaccaaggaaattactatacatg
gcgattgacggtgttgcaccgagagcaaaaatgaatcagcagaggtccaggcgattccga
gcgtctaaagaaacaactgaaaaaattactgaaataagtaggatacgctcagaactagct
cttaagggtgcatttttacctcccgagaaacccaagggggaccactttgacagtaattgt
attacgcctggtacacctttcatggcgagattatctgcttgtctacattactacattcac
gaacgattaaacaatgatcctggatggcgtggcatcaaggttattcttagtgacgcaaat
gttcctggagaaggagaacataaaattatggactacatccggaagcaacggagccaacca
gatcacgatccaaatacgcagcacgttttgtgcggagcagacgcggacttgataatgttg
ggattggcgacacatgaaccgaacttcacgattatcagagaagagtttaaaccgaataag
ccaagaccatgcgatatttgtggccaattgggtcatgaaatgaaagattgcacaggctcg
gagccagtcgcgaaggaggaagagaatatgtttggatccgagtgccaatttatattcgtc
agattaaacgtacttcgagagtatttggaacgagagttacaaatgcctaatttgcctttt
aagtacgattttgaacgtgcgattgacgattgggtcttcatgtgcttctttgtaggaaat
gattttctgccgcatcttccgtcgcttgaaatcagagaaggtgccatagatagattagtc
aatttatacaagaagactgtgtacaaaacagggggctttctgaccgacagcggtgatgtg
aatcttgacagagttcaaatgataatgtctgatcttggaaacgttgaagatgagattttt
aaaaaacgacaacaaaatgaattgtctttcaaacaacgagagaaaaacaagaaaaaaagg
ctggaggctatcagcaattacaaacccaattgggttcctgctggacaatttgctccaact
cccttgggtcaagcgacgcagcccgtacaaaacgctcgccatgaagcattccaaatgcga
atgcagggtagaaattacaacacgagcgctacagagagagcgttgaaaggaacgaacgcc
accaatgctttagagagtatgcttctgccagagggatcgggcaacagaggtcagaagcga
aagaccgacaatgtaacaacggaggaagctgacgacgatcaagctcacgacgaagtaaga
ctatgggaagatggattcaaagatcgatactatgagtccaaattcgacgtttccaaagat
aatctggctttcaggaataatgtcgcactccaatacgtacgcggcctttgttgggtactt
cgctattattaccaaggttgtgcatcttggaaatggtattttccttaccattacgctcca
tttgccagtgacttcatcaacataggtggactgtcgacagaatttgaaaaggacacagtt
ccatttcgaccactggaacaattgatgggagtttttcctgctgcgagtagctcccatgtt
cctcccccatgggcaaaattgatgagcgatccgaaatctccaatcatagatttttatcct
gaagattttaaaatcgacttgaatggaaagaaatttgcctggcaaggagttgctctattg
ccatttgtcgacgaaaagagattgttcaaagctcttgagccttactattcgtgtcttagc
gaagcagaaaaaaaacgtaacgtcagaggtgacgatcgattgtatgtcagcctcgacaat
aagagctacgattttataactggactgtataaaaataaagtagactctgatgtggaaact
aacatatgcgtcgatggcatgcgcggaacagttttactggcagaggattgcattggagat
ggtgctacgttaaattccccgatcggaggattaccagtacgagacaatcgagtttactgc
gtgagatttcgagatccgaagtatcagaaggatttcatattcccagcaaagaaactcaaa
ggtgccaaagagcctcctaaagttttgaaacctcaggactttgaacagatgaatcgagca
agtggtggtggtggtggaaatcagtggcgtccacaaattggattcacaccttcaacgcag
agggctactcttggagacgcaggtcatcgaatgctagggcatcacagaagcaacaatggt
cctggacaatacgcttatgttccccctccgcaggttggataccatcaaaatcgtgggtac
cagagtgggtaccattctggttcatccaacagtggcagctccggcggttatggcagcgta
acttctggctcagctcgaggcggaaacggcggcggtggtcgtggcaactataatcagaat
ccacaagccggagtttgggccagtggctacgtggctcaccagtcgaactatcatcaacgt
aaccaacaccacaaccaacactctcatcagcaacacaatcggcctcatccttatcagaat
aaatcacacaacagttactcgaatcctcaatggaatcattcgcaaaatcgtcgaggagga
ggaggaggaggaggaggtggaggaggaagtggtggtggtggtggtgggtggagaggccgc
taa
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integrated database retrieval system
