Neodiprion fabricii: 124183120
Help
Entry
124183120 CDS
T08986
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
nfb
Neodiprion fabricii
Pathway
nfb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nfb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124183120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nfb03041
]
124183120
03009 Ribosome biogenesis [BR:
nfb03009
]
124183120
Enzymes [BR:
nfb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124183120
Spliceosome [BR:
nfb03041
]
Complex A
U2 snRNP components
U2 related factors
124183120
Complex B
124183120
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
124183120
Ribosome biogenesis [BR:
nfb03009
]
Eukaryotic type
90S particles
Helicases
124183120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_19
AAA_22
SRP54
nSTAND3
Flavi_DEAD
ABC_tran
ResIII
AAA_25
T2SSE
AAA_30
Motif
Other DBs
NCBI-GeneID:
124183120
NCBI-ProteinID:
XP_046427137
LinkDB
All DBs
Position
5:25534555..25541970
Genome browser
AA seq
716 aa
AA seq
DB search
MSKRRIEVVDPYIKRKKDGTVANNMPTSTAAKNQVQHNPYNGLPYTPRYHEFYKKRITLP
VFEYRTDFMRLLALHQCIVLVGETGSGKTTQIPQWCVEYSRSMGTKAVACTQPRRVAAMS
VAQRVSEEMDVALGQEVGYSIRFEDCSSANTVLKYMTDGMLLREGMSDPMLEAYQVILLD
EAHERTLATDLLMGVLKEVVKQRPDLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTHPVE
IFYTPEPERDYLEAAIRTVIQIHMCEEVAGDLLLFLTGQEEIEEACKRIKREMDNLGPEV
GELKCIPLYSTLPPNLQQRIFEPAPPTKPNGAIGRKVVVSTNIAETSLTIDGVVFVIDPG
FAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTERAYKNEMQDNTYP
EILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALDDDGNLTDLGA
VMAEFPLDPQLAKMLIASCNHNCSNEILSITAMLSVPQCFVRPNEAKKAADDSKMRFAHI
DGDHLTLLNVYHAFKQNMEDPQWCYEHFVNYRSLKSGDNVRQQLSRIMDRFSLKRTSTDF
TSKDYYINIRKALVNGFFMQVAHLERTGHYLTIKDNQVVQLHPSSCLDHKPEWVIYNEFV
LTTKNYIRTVTDIKPDWLLKIAPQYYDLQNFPQCEAKRQLEGIQTRLDSKQYQEGF
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atgtctaagcggaggattgaagtggtggatccatatatcaaacgaaagaaagatggaaca
gtcgccaataacatgccaacttcaacggcggccaaaaatcaagttcagcataacccatat
aacggtcttccatatacgccacgttatcatgaattttataagaagagaataactcttcca
gtattcgagtatagaacagacttcatgaggctcttagcgctgcatcaatgcattgtctta
gttggtgaaactggatctggtaaaactactcagataccgcaatggtgtgtcgaatactca
agatctatgggtacgaaagctgtggcttgtactcagccgagaagagtagctgccatgtca
gttgcccagagggtgtcagaagaaatggatgttgctttgggtcaagaggtaggctacagc
atccgttttgaggactgcagctctgcaaatactgtgcttaagtacatgacggatggtatg
ctgcttcgagaagggatgtctgaccccatgctcgaagcgtatcaagtaatcttattagat
gaggctcatgaaagaacactggcgacagatttattgatgggagttttaaaagaagttgtg
aaacagcgtccagatctgaaattggttataatgagtgcgactctagacgcaggaaaattt
caacagtactttgataatgcaccattgatgaacgttcctggtcgaacgcatcctgtagag
atattttacacaccagaaccagaaagggattatttggaggctgcaattagaacagtaata
cagattcacatgtgcgaagaagtggctggcgaccttctcttatttttgactggacaggag
gagatcgaggaagcttgtaagagaatcaagagagaaatggacaatctaggacctgaagtt
ggagagctgaaatgcattcccttgtattccacacttccaccgaatcttcagcaaagaata
ttcgaacccgctccacctactaaacctaacggagctattggaagaaaagttgtagtatcc
acaaatattgcagaaacttcattgaccattgatggtgttgtttttgtcattgatccaggg
tttgcgaagcaaaaggtctataatccgagaattcgcgtagagtctttgttggtatcgcca
atcagtaaagcatctgcgcaacagcgagctggtagagcaggtcgaactcgtccagggaaa
tgttttcggctttatacagaaagagcatacaaaaatgagatgcaggacaacacgtatcca
gaaattcttcgttcaaatctcggcagtgttgttttgcaattgaaaaagcttggaattgat
gatctggttcattttgacttcatggatcctccagcgcctgaaacacttatgagagcactg
gagctgctcaactacttggcggcgcttgatgacgacggaaatttaacagacctaggtgca
gttatggctgaatttccgctcgaccctcagctggcaaaaatgttaatagcttcatgtaac
cataactgcagtaatgaaatactcagcatcaccgcgatgctctcagtcccacagtgtttt
gtgagaccaaacgaggccaagaaagctgcagatgactcaaaaatgcggttcgcgcatatc
gatggcgatcatctgactcttcttaatgtatatcatgcctttaaacagaatatggaagat
ccgcaatggtgttatgagcattttgtgaactaccgatcacttaagagtggagataacgtt
agacagcaattaagtaggatcatggacaggttcagtttaaaacgtacgtcaaccgatttc
acgtccaaagactattacataaacatcagaaaggcattggtcaacggattcttcatgcag
gttgcacatttagaaaggacgggacactatcttacaataaaagacaatcaggttgtgcaa
ttacatccgagcagttgccttgaccataaacctgagtgggtaatctacaacgaattcgtg
cttacgacaaaaaattacatcaggacagtaacagacataaaacccgattggttacttaaa
atcgcaccccaatactacgatttgcagaacttccctcaatgcgaagctaaaagacagctt
gaaggtattcaaacgcgactagattcgaaacagtatcaagaaggcttctaa
DBGET
integrated database retrieval system
