Neodiprion fabricii: 124183849
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Entry
124183849 CDS
T08986
Name
(RefSeq) polyadenylate-binding protein 1 isoform X1
KO
K13126
polyadenylate-binding protein
Organism
nfb
Neodiprion fabricii
Pathway
nfb03015
mRNA surveillance pathway
nfb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nfb00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124183849
09123 Folding, sorting and degradation
03018 RNA degradation
124183849
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nfb03019
]
124183849
03041 Spliceosome [BR:
nfb03041
]
124183849
Messenger RNA biogenesis [BR:
nfb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
124183849
mRNA cycle factors
Stress granule specific factors
124183849
Spliceosome [BR:
nfb03041
]
Complex C
Other components
Complex C specific factors
124183849
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_7
RBD_DEAH11
RRM_occluded
Nup35_RRM_2
POP1_C
CotJA
Motif
Other DBs
NCBI-GeneID:
124183849
NCBI-ProteinID:
XP_046428881
LinkDB
All DBs
Position
5:20137896..20149432
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AA seq
634 aa
AA seq
DB search
MNPGAPNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQ
QPADGQYFAERALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMY
DTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYVGKFIP
RKEREKELGEKAKLFTNVYVKNFGEDMNDEKLREMFEKYGPINSHKVMSKDDGKSRGFGF
VAFEDPEAAETAVTELNGKEILEGKCLYVGRAQKKAERQQELKRKFEQLKIERLNRYQGV
NLYVKNLDDTIDDERLRKEFTPFGTITSAKVMMEEGRSKGFGFVCFSSPEEATKAVTEMN
GRIVGTKPLYVALAQRKEDRKAHLASQYMQRMANMRMQQMGQIFQPGAAGSYFVPTIPQP
QRFYGPAQMAQIRATPRWPAQPNQVRPNAQTGNSGFATMQGPFRAAPRAPTAPTGGMRNA
LSARPITGQQAVGGANMQGRTMTGPAVGVSPQGRPSNYKYTANMRNPPQAMAIPAPAPVQ
QAVHIQGQEPLTATMLAAAPPQEQKQMLGERLFPLIQRMYADLAGKITGMLLEIDNSELL
HMLEHNESLKAKVEEAVAVLQAHQAKQAVATKKE
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgaatccaggagcgcctaattatccgatggcatcgctgtacgtcggtgatctgcactcg
gatataaccgaagcaatgctgtttgaaaaattttcatcggcaggcccagtgctgtcgata
cgcgtgtgcagagatatgatcactcgccgctcccttggctacgcatacgttaacttccag
cagccagccgacggtcagtatttcgcggaacgagctttagacacaatgaacttcgatatg
ataaagggaaggccgatccgtataatgtggtcacagcgcgatccgtcgttgagaaaatct
ggagtgggcaacgtgttcattaaaaacttggataagaacattgacaacaaagcgatgtac
gacacattttctgccttcggtaatattttgagttgtaaggtcgcgcaggacgaaacaggt
gcatccaaaggatatggattcgtccattttgaaaccgaagaagcagcgaacaaatcgatc
gataaagttaatggcatgttgctcaacggaaaaaaagtttacgtcggcaaattcatccca
agaaaagagcgtgaaaaggaattgggagaaaaagcaaaattgttcacgaacgtctatgtc
aaaaactttggagaggatatgaacgacgagaagcttcgcgagatgttcgaaaagtatgga
ccgataaacagccacaaggtgatgagtaaagatgacgggaagtcgcgaggcttcggcttc
gttgcttttgaggatcctgaagcagctgagacggccgtcaccgagctaaatggcaaggag
atacttgagggtaaatgtctgtacgttggcagagcgcagaaaaaggcggagcgccagcag
gagctgaagcgcaagtttgaacagcttaaaattgaacgactcaatcgctaccagggggtc
aatttatatgtgaaaaacctcgatgacaccatcgacgacgaacgcctccgcaaagaattc
accccctttggaactatcacttctgccaaagttatgatggaggagggacgcagcaaggga
ttcggatttgtctgtttctcttctccagaggaagcgaccaaagctgtcactgaaatgaat
ggtcgcatcgtcggtacaaagccactctatgtggcattggcgcagcgcaaggaagaccgt
aaggcacatttggcttcgcagtacatgcagcgcatggcaaatatgcggatgcaacagatg
ggccagatcttccagcccggcgcagccggcagctactttgttcccacgatccctcagccc
cagagattctacggccctgctcagatggcccaaatacgtgccactcctcgatggcctgct
cagccgaatcaagttcgacccaatgcccaaaccggaaactctggatttgctactatgcag
ggtccattccgtgcagcacctagggcaccgactgctcccactggcggtatgcgcaatgct
ctttccgctagaccaattactgggcaacaagctgtcggcggagccaatatgcagggtcgc
actatgactggaccagcagtgggagtttcacctcagggtcgcccttcgaactacaagtac
acggctaacatgcgaaaccctccacaagcgatggcaataccagcgccagctccggttcag
caagcggtccacatccagggtcaagagcctctgactgcgacgatgttggcagcagctcca
cctcaagaacagaaacagatgctgggagaacggcttttcccgttgatccaaagaatgtat
gccgatcttgccggcaagataaccggaatgcttttggaaattgacaattcagaactgctt
cacatgctcgagcacaacgagtcgctcaaggcgaaagtcgaggaggccgtcgcggtgctt
caggctcaccaggcgaaacaggcagttgccaccaaaaaggagtag
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