Neodiprion fabricii: 124184034
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Entry
124184034 CDS
T08986
Name
(RefSeq) 3'-5' RNA helicase YTHDC2-like
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
nfb
Neodiprion fabricii
Brite
KEGG Orthology (KO) [BR:
nfb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nfb03041
]
124184034
Enzymes [BR:
nfb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124184034
Spliceosome [BR:
nfb03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
124184034
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HA2_C
OB_NTP_bind
R3H
Helicase_C
DEAD
Ank_2
Ank
nSTAND3
Ank_5
HA2_N
Ank_4
AAA_22
AAA_19
ATPase
Ank_3
SRP54
PhoH
T2SSE
NPHP3_N
AAA_23
NACHT
AAA_25
Sigma54_activat
Motif
Other DBs
NCBI-GeneID:
124184034
NCBI-ProteinID:
XP_046429317
LinkDB
All DBs
Position
5:complement(25578154..25586233)
Genome browser
AA seq
1155 aa
AA seq
DB search
MPRRKQQKKPAIGEDTRIAVNLTIRKLLAAPEQKELEFPSSYTAEERAYIHDLAREHGLK
SKSRGKGTNRFLTVYKREGSTIVQADAIIKLQKSSRQGIYNLIQKFPLSNKERQDLLPPT
ERERIINTEVNTNTKAMGRLNGGIPQVPQLKTNMDVLPFRECLPVYNMREEIMQVLPSSQ
VIIIAGETGSGKTTQVPQFILDYCQQRNQTCRIICTQPRRLSAVSVAERVAFERDEKIGQ
TFGYQIRLESRVSPKTLLTYCTNGVLLRTLMGGDSALATITHIIVDEIHERDRFCDFLLI
ALKDALVKFRSLKVVLMSATMDTSIFLKYFNHCSVINVPGRLYDVEVLYLEDILKVTNYM
TKDMSAKKEKMVNKKDQKKVLESWTQYKPANSTINYISERNLIPAPILGQQNQPVPERVE
LEPRLVDKMDRSISEAWLCGGEDNFTQLLYFIQSENVSVDYQHSKTSVTPLMVAAGRGCI
DTTERLLNLGANLNIRSVNEWTALDWARKMNQVECAELIEAYMKTYDCETAYEDVPLDKN
IPISEEDKMLLDVYHHTFNDENVDYDLMFSLILHIHTKMPYGSILVFLPGYDDIVTMRER
INAEEKRMSERFRYNLFVLHSNMQTCDQKRVFRPSPQGTRKIILSTNIAETSITIDDVVY
VIDSGKVKEKSFDAMSGVCTLRSNWISQACAKQRKGRAGRCQNGICFRLFSSVRFNSMQP
YQTPEILRLPLQELCLYTKHLAPGNTPIAEFLDRALEPPSNAVTRNAVQLLKTIDALDPW
EDLTELGSHLLDLPVEPRLGKMLLYAVVLKCLDPILTIVCSLAYKDPFLLPSQPSQKRAA
TLSRKDFSAGTYSDHMAVLRAFQSWQTARANGRERLFCEKNFISAATMEMVVGMRTQLLG
QLRASGFVRARGSGDIRDLNSNSENWAVVKAALTAGLYPNLIRVDREHSQLRTQKEVKVV
FHPSSTLRDNPKSPRTTSAQTHSANVNALPCDWLLYEEMSRSGRFCHVKTVTLVNPITVA
LFSGPARLPMDVIYEAETIPESESDSEADEAQEGTTILKLDDWVVFKLDPEAAQLILHLR
QKWNALFLRRMKTPSKPMSQLDEQVVRTLVSVITNEEQACGLHQPSGIGQRPRPLIVDYY
PASARRPDDYEERNF
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atgccaagacgaaagcaacagaagaaaccagcgattggtgaggacaccagaatcgcagtg
aatttaacaatcagaaagcttctggctgctccggaacaaaaagaattagaatttccgtct
tcttatacggctgaggaaagagcttatatccatgatcttgccagagaacatggactcaag
tcgaaaagtcgcgggaaaggaaccaacagatttttaactgtttacaagcgggaaggatca
actattgttcaagcagatgccataataaagctacaaaagtcctcacgacaagggatttat
aatttaatacagaaatttcccttgagcaataaggagagacaggatttactcccacctaca
gagagggaacgcattattaacacagaagtcaacacgaatacgaaagcaatgggccgtttg
aatggcggaataccgcaggtaccacagcttaagacaaatatggatgttttaccatttcgc
gaatgtctaccagtctataatatgagagaggagataatgcaggttctaccatcaagccaa
gtaattataatagcaggagagacgggaagtggaaaaacaacccaagttcctcagttcatc
ctagactactgtcagcagaggaatcaaacatgcagaataatatgcactcagcctagaaga
ctgtcagcagtctcggtagcagagagagtagcttttgaaagagatgaaaaaattgggcaa
acatttgggtatcaaataaggctggagagcagagtatctccgaaaacgttgctcacttat
tgcaccaacggtgttctgctcagaacattaatgggtggtgattcggcgttggctacaata
acgcatataatcgtagatgagattcatgagcgagatagattttgtgattttcttttaatc
gcactaaaggatgccctagttaagtttagatctctaaaagttgtcctgatgagtgccact
atggatacaagcatatttctgaagtacttcaaccactgctcagtaattaacgtccctggc
agactttacgacgtcgaggtattgtatctcgaggatattctcaaagtgactaactacatg
actaaggatatgtcagctaagaaggaaaaaatggtcaacaaaaaggaccagaagaaggtt
ctagagtcttggacccaatacaagcctgcaaactcaaccatcaattacatatctgaaaga
aatttaataccagcaccaattctgggccagcaaaatcaacccgtacctgaaagagttgag
cttgagccaagactggtagataaaatggatcggtcaatatcagaagcgtggctgtgtggt
ggcgaagacaacttcacacagttactgtatttcatacagtcggaaaatgtttctgttgat
taccagcactcaaagacgtcggtaacaccgctgatggttgcagcaggaagagggtgcatc
gacacaacggagcgtctcttaaatcttggagcaaatcttaatatacgctcggttaatgaa
tggacggctttggactgggcaagaaaaatgaaccaggttgaatgtgccgagcttatagaa
gcctatatgaagacatacgactgtgaaacggcgtacgaggatgttcctcttgataaaaac
atccccatttcggaagaagacaaaatgcttctcgacgtttaccatcacacattcaatgat
gagaatgttgactacgatttgatgttttctctaattcttcacatacacacgaagatgccg
tatggatcaattcttgttttcttacctgggtatgacgacatagtgactatgagagagagg
ataaacgccgaagagaagaggatgagcgaaagattccgctacaatttgtttgtcctgcac
tccaacatgcagacttgtgaccaaaagcgagttttcagacctagtcctcaggggacgcgt
aagataatactgtccactaacatagcggagactagcataacaatcgatgatgttgtgtat
gtcattgactccgggaaagtgaaggagaagtcttttgatgctatgtctggagtttgcaca
ctcagatccaactggatatcgcaggcatgtgccaagcaacgtaaaggaagggctggcaga
tgtcagaatgggatttgcttccgtctattctcttcggtcagattcaattccatgcagcct
taccaaacgccggaaatacttaggctaccgctacaggaattgtgcctctataccaaacac
ttggctcctgggaatactccaatagctgaattcttggacagagcattggaaccgccgtct
aacgctgttacccgcaacgctgttcaactcctgaagactatagatgctctagatccgtgg
gaagacctgacagaacttggaagtcacctcttagatctacctgtcgaacctcgactcggc
aaaatgcttttatatgcagttgtgctgaaatgccttgatccaattctcaccatcgtttgc
agtcttgcttacaaggatccgtttcttttgccttcgcaaccatcgcaaaagcgtgcagcc
actctgtctcgtaaggatttttcagcaggtacatattcagaccacatggctgttctgcga
gcttttcaaagctggcaaacagctagagcaaacggtagagagcggctcttttgtgaaaag
aattttatctctgctgcaacgatggaaatggtcgttggaatgcgcactcaacttcttgga
caactcagagcctctgggtttgtaagagcaagaggctctggcgatatccgcgacctcaac
tcgaactccgagaattgggccgtggtgaaagcagcacttacagctggactgtacccaaat
ctgatcagggtagacagagaacattcgcagcttcgaacacaaaaagaagtcaaggtagtc
tttcatccttcctccacgcttcgagataacccaaaatcacctcgtactacatccgcacag
acccactctgctaatgttaacgctttaccatgcgattggttactgtatgaagaaatgagc
cgctccgggcgtttctgtcacgtcaaaacagttaccctcgtcaatcctatcacagttgcg
ttatttagtggaccagcacggttaccaatggacgtaatttacgaggccgaaactattcct
gagagtgagtcggactctgaggcagatgaggcacaagagggaacaacaattttgaaattg
gacgactgggtagtattcaaattggaccctgaagcagctcaacttattttacacctgcga
cagaagtggaacgctctgttccttagacgaatgaaaactccaagcaaacctatgtcgcaa
ctcgatgaacaagtagtcagaactctagtttctgttattactaatgaagaacaagcttgt
ggtcttcatcaaccatctggaattgggcaaagaccacgtcccttgatcgttgactattat
ccagccagcgctaggcggccagatgattatgaagagagaaatttctag
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