Neodiprion fabricii: 124185882
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Entry
124185882 CDS
T08986
Name
(RefSeq) fibril-forming collagen alpha chain-like isoform X1
KO
K19719
collagen type II alpha
Organism
nfb
Neodiprion fabricii
Pathway
nfb04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
nfb00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
124185882
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
nfb00536
]
124185882
Glycosaminoglycan binding proteins [BR:
nfb00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
124185882
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
CFC
PhoD
Motif
Other DBs
NCBI-GeneID:
124185882
NCBI-ProteinID:
XP_046433068
LinkDB
All DBs
Position
1:complement(943708..961716)
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AA seq
1612 aa
AA seq
DB search
MTGRSGRTRLLLLGIAAFLVLLESTETQAARTKIRHHRIRPVQAQQPDNARNTDYDYEPE
YYDTYDDYEEQIKNETQPSVSPVPEENGAPPVRPTSASSGSTSFGENLVGPRLPGSAPTT
SSPDNPPTETVPESSEPPSGGGDNVGCTFDGVPHGADDEWKPDRCTSCRCIRGKAECSQS
IPCLSGGNCDGVVCVQISCETEQYIPLGQCCPVCAESGPITGGAASLQPNLPSGILPGES
NRVNSIAVSGPRGEPGRPGDGGRQGDAGFPGTPGTPGIPGPPGPPGPAPDVSLYYQQLAL
SQAGQDKGPTGAAAPLYGGPDAYAYMQAQVGPVGPRGPPGPNGNPGPQGFQGIRGEPGEP
GPMGPTGLPGPRGLTGLPGKDGNVGEDGESGPQGSPGPMGPRGLPGMPGLPGMKGHRGFP
GLDGAKGEQGHSGEKGSSGGPGPMGPMGLMGPAGPRGERGREGSPGPPGIRGIDGISGPP
GVPGVPGKSGPPGFPGSPGNKGDQGAQGSKGSMGLQGPRGESGRPGQPGESGPSGPQGKD
GYPGEKGSTGAPGMLGQPGFPGVRGQPGLAGNPGTPGAKGMPGLPGERGYKGEIGAKGDS
GAPGPRGMPGPAGNEGKRGKRGMRGSIGASGPPGERGIPGVRGLPGPDGALGPKGQTGDR
GPVGGSGPKGATGDPGRPGLQGLQGPRGLMGRPGGPGKPGNPGERGIQGADGKPGDIGPM
GLQGLPGPLGLPGDKGYPGEPGRDGEPGAQGPPGPRGDSGKDGPSGAPGPQGPPGSDGGR
GPPGPAGPRGFQGMPGSSGNPGMPGKDGEVGLQGPPGLPGPSGNRGERGFPGERGPVGSP
GAPGLRGESGSQGNDGFPGTPGPKGDKGHSGLPGLIGLPGLRGAPGMPGDKGERGSYGPV
GPEGPAGRMGERGPQGPMGQPGPPGEPAERGDTGPPGVPGEAGAPGNPGERGPQGPQGLQ
GFPGPHGLSGLPGVKGERGYQGLKGDQGSPGATGNPGEPGLPGLVGLTGAKGARGEAGTR
GESGLMGPPGLPGLLGAAGQPGAPGAPGLAGLPGVKGSQGDTGRTGNPGPMGNPGMPGVE
GMKGESGSEGPPGLSGPPGPQGPAGDRGMPGLPGPAGAVGLRGMRGAPGETGLPGKPGPE
GPLGPNGMPGPAGPPGPGGEAGPEGSPGKQGQPGIAGRPGDKGPPGMPGSSGNPGPSGLP
GPPGQSGPQGPAGERGLRGEAGPQGVEGQRGATGKPGPVGPEGIKGDRGEPGPTGAKGHR
GLIGLQGLQGSPGFPGEKGMVGAPGLDGKNGEIGVRGLPGRDGSQGPQGMPGNTGPRGPP
GEEGRHGATGPPGPPGPPGPPGELGLGYDAASLAALLNAGQGQSKGPDPLSGDEPARIFG
KDITEAERKELIMKAYEQLKASFQKYVKPDGQKQSPAKTCRDLFVAYPEKPSGEYWIDPN
EGDQRDAILVYCDIENRKTCLLPKPPQSPEITYIGNEQEVWLSEMENGMQITYKADTNQI
SFMQLLSSHAEQNVTYHCKNTVGYFDSQRRTYRRGLKLLAWNDVELTPRGNQRLRYDMIL
DECRERSHQWGKTMISYQTDKPVRLPILDVGLRDVGKQDQRFSVEIGPVCFR
NT seq
4839 nt
NT seq
+upstream
nt +downstream
nt
atgaccgggagaagcggccgaacccggctccttcttctggggattgccgccttcctggtc
ctcctggaaagcaccgaaacccaggcggcgagaaccaagatcaggcatcaccgtataaga
ccggttcaggctcaacagccggacaatgcacgtaacaccgattatgactatgaacctgag
tactacgacacctacgacgactacgaggagcaaatcaagaacgaaacgcagccgtccgta
agtcccgtaccagaagaaaacggtgccccgccagtaagaccaacgtctgcatcgtctgga
tcaacatcatttggtgaaaacttggtcggtccgagactgcccggaagtgcgccgacaaca
tcatcccctgataatccgccgactgagacagttccggaatcgtcggaaccaccaagcgga
ggtggtgacaacgttggctgcacattcgatggggtgccccatggagccgacgatgaatgg
aagccagaccgttgcacatcgtgccgctgtattcggggaaaagctgaatgttcccaatcg
attccatgcctatcaggtggaaattgcgacggtgtggtctgtgtccagatatcctgtgag
acagaacaatacattcctctgggccagtgctgtcccgtatgcgcagagtctggaccaata
acaggaggagccgcttccctacaaccaaatttaccgtcaggaattctcccgggagagagc
aatcgggtcaattcaattgcagtctccggtccaaggggagagccgggacgcccgggagac
ggcggtcgtcaaggagacgcgggatttccgggaacccccggcactccaggtattcctgga
ccacccggacctccgggacccgcacctgacgtgtccctgtactatcaacaactcgccttg
tcgcaagctggacaagacaaaggtcctacaggagctgccgcacctttgtacggaggtcct
gacgcatatgcttatatgcaagctcaggttggtcccgttggacctcgcggacctccagga
ccgaacggcaatcccggtcctcagggcttccaaggaatacgaggcgagcccggagaaccc
ggacccatgggaccaaccggcctgccgggacctcgaggattaaccggacttcccggaaag
gatggtaacgttggcgaggacggagagtcagggcctcagggttctccgggccctatgggc
ccgagaggtctaccgggaatgcctggccttcctggtatgaagggacaccgtggatttcct
ggtctggacggagcgaaaggagagcaaggtcattcgggagagaaaggatcttccggtggg
ccgggaccgatgggtcccatggggttaatgggtccagctggtccgcgcggcgagcgaggg
cgcgaaggatctccgggacccccgggaatccgaggaatcgatggcatttcagggccaccc
ggagtgcccggtgtaccaggaaaatcaggacctcccggttttccgggcagccccggtaat
aaaggggatcaaggtgctcaaggttctaagggcagtatgggtctccaaggaccaagaggc
gaatctggacgccccggccaacctggagaatctggaccatccgggccgcaaggaaaagat
ggttacccgggagaaaaagggagtaccggagcacccgggatgctgggacaacccggtttt
cccggagttcgggggcagccggggctagctgggaatccgggaactccgggagcgaagggg
atgccgggcttgccaggcgaaagaggatacaagggtgaaatcggggcgaagggtgactcc
ggagctcccggtcctcgcggtatgcccggaccagccggcaacgagggtaaaagaggaaag
cgaggaatgcgaggttctatcggggcctccgggcctccgggtgaacgcggaatacccggt
gttcgcgggcttcccggtcccgacggcgccttagggcccaaaggacaaaccggagatcgt
ggacccgttggaggaagtggtccaaagggtgcgaccggagatccagggaggccaggtctg
caaggcttgcagggtcctcgagggttaatgggacgtcctggtggaccaggaaaacctggg
aatccgggagagcgaggaattcagggtgcggacggaaagcccggtgatataggaccaatg
ggactacagggattaccgggacccctgggacttcctggagacaaaggatacccgggagaa
cctggaagagatggtgaaccaggtgcacaaggtccaccggggcccagaggtgactctggt
aaggacggaccatcgggtgcaccaggtcctcaaggaccgcccggaagcgatggaggccga
gggccaccaggtcccgcaggtcccagaggattccagggaatgcctggaagcagcggtaac
ccgggaatgccagggaaggacggagaagtaggacttcagggtccacccggacttccggga
ccttctggaaatcgaggagaacgtggttttcccggggaacgtggtccagtcgggtcaccc
ggggcaccgggactaaggggagaatcaggatcgcagggcaatgacggatttccgggtacc
ccaggacccaagggtgataaaggacactcaggactgcccgggctaataggattgccggga
cttcggggcgcgccaggaatgcctggcgataaaggagaaagaggatcgtacgggcccgtg
ggtcctgaaggaccagcaggaagaatgggcgagcgtgggccgcaaggaccaatgggacag
ccggggccacccggcgaaccagctgagcgtggagacaccggacctccgggagtccctggt
gaagctggagctcctggtaaccccggggagagaggacctcaaggtccccaaggccttcag
ggcttccccggaccgcatggtctttccggattgcccggtgtgaagggggagcgtgggtat
caaggattgaagggagaccaagggagccctggagcgacaggaaatcctggggaaccggga
ctcccgggtctggtgggattgaccggagctaaaggagctcggggcgaagccggtaccagg
ggtgaatctggattgatgggtcctccgggcttgccaggactactaggagctgcgggtcaa
ccaggcgctccgggagctcccggtctcgcggggctaccgggggtcaagggaagccagggt
gacaccggtcgaaccggcaatcccggaccgatgggtaaccctggaatgccaggagtggag
ggtatgaaaggggaaagtggatcggaggggccgccaggcctgagtggtccaccggggccg
caaggaccggcaggagaccgaggaatgcccggactaccggggcccgcgggagccgtcggc
ctcagagggatgcgaggtgctccaggtgaaactggattacccggaaaaccaggacccgag
ggaccgctaggacctaacggaatgcctggccctgccggacctccaggtcctggtggtgag
gccggtccagaagggtctccgggaaaacaagggcaaccgggaattgctggaaggcctgga
gacaagggaccgcctggtatgcctggatcgtccggaaatcctggaccgagtggattgcct
ggaccgccaggacaatctggaccacaaggaccggcgggagaaagaggcctgagaggagaa
gctggccctcagggtgtcgaaggacaacggggtgcgacgggtaagccggggcctgttggt
cccgagggaataaagggtgatcgcggagagcccggaccaaccggtgcgaagggacaccgt
gggctgatcgggcttcaaggactgcagggatcaccgggtttccctggtgaaaagggaatg
gtcggagctcctggcctggatggaaagaacggagagattggcgtgcggggtctcccaggt
agagacggaagccaagggcctcaaggtatgcctggaaacacggggcccaggggtccgccc
ggagaagaaggacgacacggagcaactggaccaccgggaccaccaggtcccccgggaccc
ccgggagaacttggccttggctacgacgcggcatctttggctgctcttctgaacgctggt
cagggccagagtaagggtcccgacccactgagcggtgatgaaccagcaaggatattcggc
aaggatatcaccgaggcagagcgcaaggaacttataatgaaagcgtacgagcagctcaaa
gcgtccttccagaagtacgtcaaaccggatgggcagaaacaatcgccagcaaaaacctgt
agggatcttttcgtcgcatacccggaaaaaccgagtggcgaatattggatagacccgaac
gaaggagaccagcgtgatgcaatcctggtttattgcgatattgaaaatcggaagacctgc
ctgttgccgaaaccgcctcaatccccggaaatcacatatatcggtaacgaacaggaagtt
tggctgagtgagatggaaaacggaatgcagattacttataaggccgataccaaccagata
agttttatgcaactactgtccagccatgctgaacaaaacgttacttaccactgcaaaaat
accgtcggctactttgattcccaacgacgaacatacaggcggggattgaagcttcttgcg
tggaacgacgtcgagcttacaccccgtggtaatcagcggctgcggtacgacatgatattg
gacgagtgtcgggaacgttctcaccaatggggtaagacgatgatcagttatcaaacggac
aaaccggttcgtctgccgatattagacgttggcttgagggacgttggtaagcaggatcag
agattttcagtggaaattggtcccgtgtgcttcagataa
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integrated database retrieval system
