Neodiprion fabricii: 124186861
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Entry
124186861 CDS
T08986
Name
(RefSeq) exosome complex exonuclease RRP44
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
nfb
Neodiprion fabricii
Pathway
nfb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nfb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124186861
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nfb03019
]
124186861
Messenger RNA biogenesis [BR:
nfb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
124186861
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Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
OB_Dis3
PIN_4
Rrp44_CSD1
CSD2
Rrp44_S1
Dis3l2_C_term
Motif
Other DBs
NCBI-GeneID:
124186861
NCBI-ProteinID:
XP_046434878
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All DBs
Position
7:24498140..24505042
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AA seq
979 aa
AA seq
DB search
MLTTKTFFRKTKRGNILKIVREHYLRDDIWCGSNLCSICKHKSKDLVLDEDPESKSSLYP
QGHYLVLDTNVVLDQIDVLEEDALCNVIILQTVLEEVRHRSSNVYKKLRDIIGDPKRKFY
VFVNEHHKDTYIEREPRENVNDRNDRAIRVAAAWYQDHVNASKGARKEKQKVDVVLLTDD
AANRDKASGEGINAASMQDYVASLIDAGFLQDKLCKRNYVLEGESKTPLFPPHLTPAQIH
DGIKSRKLLQGTFLASRENFLEGSVNVEGYEKFILLQGKLALNRAVDGDIVAIELLPEDQ
WSVPSDLVIQDEEEDPSDLLEDETELKAIKVPKNIQRTPTGVVVGIIRRKWRQYCGILQP
SLVKGNVRHMFVPAERKIPRVRIETRQSENLSKQRIIVAIDSWPRNSRYPLGHFVRALGN
IGDKETENEVLLLEHDIPHNRFSDAVLSFLPKLPWLITEADVTQRVDLRHIDVCSVDPPG
CTDIDDALHCRELENGNLEVGVHIADVSHFIRPGTALDKEAASRGTTVYLVDKRIDMVPE
LLSSNLCSLRGNEERFAFSCVWEMDEKANIIDTKFHKSIIRSRQAMTYEEAQLKIDDETQ
QDSIAKSLRGLNSLAKKLKAKRFENGALVLASPEIRFEVDSETHDPIDVQAKKLRETNSM
VEEFMLLANTSVAKKIVQDFPECSMLRRHPEPPQANFDPLVKAGRNRGFVINTASGKELA
TSLNEAHTEDNPYFNTMLRILATRCMMQAVYFTSGMLQPEEYFHYGLACPIYTHFTSPIR
RYADIMVHRLLAVCIGADATYPNLLDKKKNHELCYNLNYRNRMAQYAGRASVALNTHLFF
REKVQNEEGYVLFVRKNALQILIPKYGLEGTLYLSKKGEVSPVNFIYDEEDQSQKFEHIV
FHSFDPVVVQLSLDRSNVQHEKLVFKLVKPVIPGFSIPTKSDPEMVPKSNIVPKRKTEEK
PTGSEISGGKRGRRKKQKK
NT seq
2940 nt
NT seq
+upstream
nt +downstream
nt
atgttgactacgaaaacatttttcagaaaaacaaagaggggaaatattctcaagattgtc
agagagcactacctcagggatgatatatggtgtgggtcaaatctgtgctcaatatgtaaa
cacaaaagcaaggatttagtccttgatgaagaccctgagtcgaaaagttcgttataccct
cagggacactatcttgttctggataccaacgtagttctcgaccagattgatgttctcgaa
gaagatgctctgtgcaacgtcataattttgcaaactgtgcttgaagaggtacggcacaga
agttccaatgtgtacaaaaaactgagagacattattggcgatcctaagcgaaagttttac
gtcttcgttaatgagcatcataaggatacctatattgaacgagaaccacgtgagaacgta
aatgatcgcaatgatagagctatcagagtcgctgcagcttggtaccaggatcacgtgaat
gcgagcaaaggtgctcgtaaagagaagcaaaaggttgacgttgttttgcttacagacgat
gccgcgaatcgagataaagcgagcggtgaaggcatcaacgctgcgtcgatgcaagattat
gttgcatcgttaattgacgctgggttcttacaagacaagctgtgtaagcggaactatgtt
ctcgaaggagaaagcaagacaccgctgtttccaccacacttgacgcctgctcaaattcac
gacggtataaagagcaggaaattgctacaaggaacgttccttgcttcaagggagaatttt
ttggaaggaagtgtgaatgtcgaaggatacgaaaaatttatattgttgcaaggaaaactc
gcactgaatagagcagtcgacggggatatcgtcgctatcgagctactgcccgaagatcag
tggagtgtaccctcggatttagttattcaagacgaagaagaagatcctagtgatttgctg
gaagatgaaaccgagttgaaggctataaaagttccgaaaaacattcagagaacgcctacc
ggggttgtggtaggcataattagacggaaatggcgacaatactgcggtattctgcagccc
agtcttgtgaaagggaacgtgaggcacatgttcgttccggcagagcgaaaaataccgcga
gtaaggatcgaaactcgtcaatctgagaatctgagcaagcagcggattatagtcgcgata
gactcttggccccgcaactctagataccctttgggccactttgtcagagcacttggtaac
attggtgataaagaaacagagaacgaagtcctcctccttgagcacgacattcctcacaac
agattctcagacgcggtcctcagttttcttccaaaattaccctggctgataaccgaggcg
gacgttacccaacgcgtcgatctgcggcacatagacgtttgctcggtcgacccaccgggt
tgtacggacatcgacgatgccctgcattgtcgggaattggaaaatgggaacctcgaggtc
ggggtccacatcgcggacgtttctcacttcattcgtcctggaaccgcgctggacaaggaa
gccgcgtcacgtggcaccaccgtctacctcgtcgacaagaggatcgacatggttccggaa
ctactcagctcgaatctttgctctcttcgtggtaacgaggagagattcgcgttttcgtgc
gtatgggaaatggacgaaaaggctaatataatagacacgaaatttcacaagagtattatc
cgatctcgacaagccatgacttacgaggaggctcagctcaagattgacgacgaaacgcag
caagattccattgccaagtcgctgaggggcctgaatagtttggctaaaaaattgaaggcg
aaacgttttgagaacggagcgttggttttggcctcaccggaaatccggtttgaggtagac
agcgagacccacgaccccatagacgttcaggcgaagaagcttagggagactaactcgatg
gtcgaagaatttatgttgcttgccaatacttctgtggcaaaaaaaattgttcaagatttt
ccggagtgctcaatgctcagacgacatccggagccgcctcaggcaaactttgatccactc
gtgaaggctggaaggaaccggggcttcgtcataaatactgcgtccggcaaggagctcgca
acttctttgaacgaggctcacaccgaggataacccgtatttcaatacgatgctcaggata
ctggcgactcgatgcatgatgcaggctgtttatttcaccagcggaatgttgcagcctgaa
gaatactttcattatggtcttgcgtgtccgatttacacgcatttcacatcgccaataaga
aggtacgcagatatcatggttcaccgtctcctcgccgtctgcataggtgccgatgcgacc
tatcccaacttacttgacaagaagaagaaccacgagctgtgttacaacttgaactacaga
aacagaatggcccagtacgccggcagagcctcagtcgccctgaatacgcacttgtttttc
agagagaaagtacagaacgaggagggttacgtgttatttgtaaggaaaaacgcccttcag
attctcataccgaaatacggactggagggaactttatatcttagtaaaaaaggcgaagtt
tcacctgtaaatttcatttatgacgaggaagaccagagccagaaattcgaacacattgtt
ttccattccttcgatccagtcgtggtccagctgagtcttgaccggtcaaacgttcagcac
gagaagcttgtgttcaagcttgtgaagccagttatccccggattcagtattccgacgaaa
tccgatccggaaatggttccgaaatcgaatatcgtgcccaaacgtaagacggaagaaaaa
ccgacgggctcggaaatttcgggcggaaaaaggggtaggagaaagaagcagaaaaagtga
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