Neodiprion fabricii: 124187792
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Entry
124187792 CDS
T08986
Name
(RefSeq) CCR4-NOT transcription complex subunit 6 isoform X1
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
nfb
Neodiprion fabricii
Pathway
nfb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nfb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124187792
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nfb03019
]
124187792
Enzymes [BR:
nfb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
124187792
Messenger RNA biogenesis [BR:
nfb03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
124187792
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
124187792
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_8
LRR_14
LRR_4
LRR_1
LRR_LRWD1
Motif
Other DBs
NCBI-GeneID:
124187792
NCBI-ProteinID:
XP_046435922
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All DBs
Position
1:9703277..10181514
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AA seq
589 aa
AA seq
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MVNIRKKTGFRMSRNHKDKYENANPRRTHTIMSTEDANSGKKSYWPELEITGSIRNLSPN
VWQLTHLTALYLNDNSLQRIPSEIGRLANLRLLDLSSNKLRSLPAELGDLIYLKELLLNQ
NYLRVLPYELGKLFQLQVLGLHGNPLNKEVLALYGEPSGTHKLLSYMLDNLQGSYSHSLT
HVRCVLTATGQLVYSISTEGSNNVTANHPPQRPWIPLTRPNRTRPTCIFTVMCYNVLCDK
YATRQMYGYCPSWALDWEYRKKGILDEIRHYAADIISLQEVETDQFYNFFLPELKHDGYD
GIFSPKSRAKTMAENDRKYVDGCAIFFRTAKFVLIKEHLVEFNQLAMANAEGSDNMLNRV
MPKDNIGLAALLRTKEAAWDNGLPSDPAHVQQPILVCTAHIHWDPEYCDVKLIQTMMLSN
ELRSILDQTGQSFRPGHKPDSSNVQLLLCGDFNSLPDSGVIEFLTSGRVPADHRDFKDLT
YKSCLQKISGCDKPNEFTHSFKLASAYSEDIMPYTNYTFDFKGIIDYIFYSKQSMVPLGL
LGPLSADWFREHKVVGCPHPHVPSDHFPLLVELEMTPTVGTSNGLISRR
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atggttaatatacggaagaaaacaggatttaggatgtcccgcaatcacaaagataagtat
gagaatgctaacccacgtcgtacgcacactatcatgtccactgaggatgcaaactctggg
aagaaatcttattggccggagttggagataacaggcagtattagaaatctcagtccaaat
gtttggcagctgacacacctgacggcgctgtatctcaacgacaacagtctccagaggata
ccttctgaaattggccgtcttgcgaatctgcgattgttagatttaagcagcaacaaactg
cgtagtctgcctgctgagttgggggatctcatctacctcaaggagttgttattgaatcaa
aactaccttcgcgtgttaccttacgaactcgggaagttgttccagttacaagtgcttggt
cttcatggaaatccgctgaacaaggaggtgttggctctctacggggaaccatcagggact
cacaagctgctatcttacatgctggacaacttacaaggttcgtacagccattctctaact
cacgtgcggtgcgttttaactgccacgggtcagttggtatattctatcagcacagagggt
tcgaataatgtaacggcaaaccatccaccgcagagaccatggatccccttgacaaggccc
aacaggacccgaccgacctgtatattcacagtgatgtgttacaacgtactgtgcgacaaa
tacgcaacgaggcagatgtacggctactgcccaagttgggccttggactgggaatatcgg
aaaaagggaatcctggatgagatccgtcattacgcagcggacataataagcctacaggag
gtagaaaccgatcaattctacaacttctttctaccagagttaaagcacgacggttacgat
ggaattttttcgcccaaatccagagccaagaccatggcggaaaatgatcggaaatacgta
gatggatgcgcaattttttttcgaacagccaagtttgtgttaatcaaagaacacctagtc
gaattcaaccaattggctatggcgaacgccgaaggttcggacaacatgctcaacagagtc
atgccgaaggacaacatcggcttggcagcccttctcagaacgaaagaggcagcctgggat
aacggcttgccatcggatccagcacacgtacagcagccaatattggtctgtacagcacac
attcattgggaccctgaatactgtgacgtcaagctgattcaaacaatgatgctcagcaat
gagttgcgatccatactggaccaaactgggcaatcattcagacctggacataagcctgat
tcgtccaacgttcaattactgctttgcggagatttcaattcccttccagattcaggagtt
atcgagtttttaacatccggacgtgtgccagctgaccacagagacttcaaagatcttacc
tacaaatcgtgtctgcaaaaaatatctggttgcgataaaccaaacgagttcacacactcg
tttaagcttgcatctgcttacagcgaagacatcatgccttacacaaactatacgttcgac
tttaagggaattatagattacattttttactccaaacaaagcatggtacctcttggactc
cttggtccgttgagtgcagattggtttagggagcacaaggttgttggatgtccccatccc
catgtgccctctgaccacttcccgctgctagtggagctagaaatgacccctacagtagga
acaagcaacggattgatctcacgcaggtag
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