Nocardioides faecalis: KG111_03350
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Entry
KG111_03350 CDS
T09118
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
nfc
Nocardioides faecalis
Brite
KEGG Orthology (KO) [BR:
nfc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nfc03019
]
KG111_03350 (hrpA)
Enzymes [BR:
nfc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
KG111_03350 (hrpA)
Messenger RNA biogenesis [BR:
nfc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
KG111_03350 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
HA2_C
Helicase_C
OB_NTP_bind
DEAD
HA2_N
AAA_22
AAA_19
NACHT
nSTAND3
T2SSE
SLFN-g3_helicase
ResIII
AAA_30
RINT1_TIP1
AAA_25
PhoH
AAA_23
Motif
Other DBs
NCBI-ProteinID:
QVI59419
LinkDB
All DBs
Position
720588..724451
Genome browser
AA seq
1287 aa
AA seq
DB search
MDITYPPDLPVSARRDDIAEAIRDHQVVIVAGETGSGKTTQLPKICLELGRGTPGEDGRP
RMIGHTQPRRIAARAVAERISAELGVELGELVGYQVRFTDRTSKESRVKLMTDGILLAEL
QRDRMLRRYDTIIIDEAHERSLNIDFLLGYLKQLLPKRPDLKLVITSATIDTQRFAEHFD
DAPVIEVSGRTYPVEIRYRPLLDLPEDDEDGEPIVRDQTEAIVDAVKELSAEGPGDVLVF
LPGEREIRDTAEALADLAGSGRSAYGGVDVLPLYSRLSAAEQHRVFAPAAGSRRRVVLAT
NVAETSLTVPGIRYVVDTGVARISRYSARTKVQRLPIEPISQASANQRSGRCGRVAAGIA
IRLYSEEDFEARPAFTDPEILRTNLASVILQMSSLGLAGRGGDISRFPFVEPPDRRNVQA
GVQLLTELGAVSGRGDLTKVGKRLARLPIDPRLGRMLLEAERLGCVRDVLVIVAALSLQD
PRERPSADEPKERAQADQLHARFKAEGSDFLTLLNLWNHLRTQQKELSGSAFRRMCKREF
LNYLRVREWQELVSQLRQVTKEMGIRLEAPGETVDADGIHQALLSGLLSHVGLLEEREKA
DPRAGGRKERRRPGPREYLGARGARFAIFPGSGLARKNPQFVMAGELVETGRLWARQNAE
IKPEWAESLGAHLVKRSYSEPHWSRKRASVVAKERVTLYGVPLAADRTVAYGRIDPELSR
ELFIRHALVYGEWDTRHRFFHHNRTLLAQAEELEHRARRRDLVVDEHTLFDFYDARVGKD
VVSGAHFDRWWRDARRAQPELLTFDPAMLTHDAAEEVSAVDYPEEWSLPGGLSLPIGYHF
EPGAADDGLTIDVPVATLNQVDDEDFSWLVPGLRTELVTELIRGLPKALRVSFVPAPNTA
REFLAAVPPGTEPLLDALERYLRAKTGVHVPHEAWDLDALPAHLRPGFRVLDERGRVQAR
GKSLAELKAPLRPTFERAMSEVASDSGMARTGERTWVFDEIPAAATWTRAGHQVEAYPGL
VDEGDTVGLGVFGSVAERDARHREGVVRLLLLQLGIAPLAGIVEGLSNAEKLGLAGTPYP
GVPALLADCLRAVVLDTVDARGDVRTREEHDALLATLRASAAADVRGVLAELQRVLATWR
EVERMLSGRAEMSMLPALTDLKAQLARLVHDGFVGEAGAARLRRYRTWLGAMKERRTALE
TGGPAALVKDRQRMELVGPLQQAWLDRMQALPAGRPPGRELRAVGWMLEEYRVSLWAQKL
GTDGPVSDVRIRKALDALDRPPSRRTT
NT seq
3864 nt
NT seq
+upstream
nt +downstream
nt
gtggacatcacctacccgcccgacctgccggtcagcgcacgccgcgacgacatcgccgag
gccatccgcgaccaccaggtcgtgatcgtcgcgggggagaccgggtccgggaagaccacc
cagctgcccaagatctgcctcgagctgggccgcggcacccccggcgaggacggccggccc
cggatgatcgggcacacccagccccggcggatcgccgcgcgcgcggtggcggagcggatc
agcgccgagctcggcgtcgagctgggcgagctggtcggctaccaggtccggttcaccgac
cggacgtcgaaggagagccgggtcaagctgatgaccgacggcatcctgctcgccgagctg
cagcgcgaccggatgctgcgccgctacgacacgatcatcatcgacgaggcccacgagcgc
agcctcaacatcgacttcctgctcggctacctcaagcagctgctgcccaagcgcccggac
ctcaagctcgtcatcacctccgcgacgatcgacacccagcggttcgccgagcacttcgac
gacgcgccggtgatcgaggtctccgggcgcacctaccccgtcgagatccgctaccgcccg
ctgctggacctgcccgaggacgacgaggacggcgagccgatcgtccgcgaccagaccgag
gcgatcgtggacgccgtcaaggagctctccgccgaggggcccggcgacgtgctggtcttc
ctgcccggcgagcgggagatccgtgacaccgccgaggcactggccgacctggccggctcc
gggcgctcggcgtacggcggcgtcgacgtgctgccgctgtactcccggctctcggccgcc
gagcagcaccgggtcttcgcgcccgcggccgggtcgcggcgccgggtggtgctggccacc
aacgtcgcggagacctcgctgacggtgcccggcatccgctacgtcgtcgacaccggcgtc
gcccgcatctcccgctactccgcgcgcaccaaggtccagcggctgccgatcgagccgatc
agccaggcctcggccaaccagcgctcgggccgttgtggccgggtcgcggccggcatcgcc
atccggctctactccgaagaggacttcgaggcccgcccggcgttcaccgaccccgagatc
ctgcgcaccaacctcgcctcggtcatcctgcagatgtcgtcgctggggctggccggccgc
ggcggcgacatcagccgcttcccgttcgtcgagccgccggatcggcgcaacgtgcaggcc
ggcgtgcagctgctcaccgagctcggcgcggtctccggccgcggcgacctgaccaaggtc
gggaagcgcctggcccggctcccgatcgacccccgcctgggccggatgctgctcgaggcc
gaacggctcggctgcgtgcgcgacgtcctggtcatcgtcgccgccctctccttgcaggac
ccccgggagcggcccagcgccgacgagcccaaggagcgcgcccaggccgaccagctgcac
gcccggttcaaggccgagggctccgacttcctcaccctgctcaacctgtggaaccacctg
cgcacccagcagaaggagctctccgggagcgccttccggcggatgtgcaagcgcgagttc
ctcaactacctgcgggtgcgggagtggcaggagctcgtctcccagctgcgccaggtcacc
aaggagatgggcatccggctggaggcgccgggtgagaccgtcgacgccgacggcatccat
caggcgctgctgtccggcctgctgtcccacgtcggcctgctcgaggagcgggagaaggcc
gacccgcgggcaggcgggcgcaaggagcgtcgccggcccggcccgcgggagtacctgggc
gcccgcggcgcgcggttcgcgatcttccccggctccggcctggcccggaagaacccgcag
ttcgtgatggccggcgagctggtggagaccggccggctctgggcccggcagaacgccgag
atcaagcccgagtgggccgagagcctcggcgcgcacctggtcaagcgcagctactccgag
ccgcactggtcgcgcaagcgggcctcggtggtggccaaggagcgggtcaccctgtacggc
gtcccgctggccgccgaccgcaccgtggcctacgggaggatcgaccccgagctctcccgc
gagctgttcatccgccacgccctggtctacggggagtgggacacccggcaccggttcttc
caccacaaccgcacgctgctggcccaggccgaggagctcgagcaccgcgcccggcgccgc
gacctggtcgtcgacgagcacaccctcttcgacttctacgacgcccgggtcggcaaggac
gtcgtcagcggcgcccacttcgaccgctggtggcgcgatgcccgccgcgcacagcccgag
ctgctcaccttcgacccggcgatgctcacccacgacgccgccgaggaggtcagcgccgtc
gactaccccgaggagtggtcgctgccgggcgggctgagcctgccgatcggctaccacttc
gagcccggcgccgccgacgacggcctcaccatcgacgtaccggtggccacgctgaaccag
gtcgacgacgaggacttctcctggctcgtgcccggcctgcgcaccgagctggtgaccgag
ctgatccgcggcctgcccaaggcgctgcgggtgagcttcgtgccggcgcccaacaccgcg
cgggagttcctggcggccgtgccgccgggcaccgagccgctgctggacgccctggagcgc
tacctgcgggccaagaccggcgtgcacgtgccgcacgaggcctgggacctcgacgcgctg
cccgcgcacctgcgccccggcttccgggtcctcgacgagcgcggccgggtgcaggcccgc
ggcaagtcgctcgccgagctgaaggcgccgctgcggcccaccttcgagcgcgcgatgtcg
gaggtcgccagcgactccgggatggcacgcaccggtgaacgcacctgggtgttcgacgag
atccccgccgctgccacctggacccgcgccgggcaccaggtcgaggcctacccggggctg
gtcgacgagggcgacaccgtcggcctcggcgtcttcggctccgtcgccgagcgcgacgcc
cggcaccgcgagggtgtcgtgcggctgctgctgctccagctcggcatcgcaccgctcgcc
gggatcgtcgagggcctgtccaacgccgagaagctcgggctcgccgggacgccgtacccg
ggggtgccggcgctgctggccgactgcctgcgcgcggtggtgctggacaccgtcgacgcc
cgcggcgacgtccgcacccgcgaggagcacgacgccctgctcgccacgctgcgcgccagc
gctgccgccgacgtgaggggcgtgctcgccgagctgcagcgggtgctggcgacctggcgg
gaggtcgagcggatgctcagcggccgcgccgagatgtccatgctgcccgccctcaccgac
ctgaaggcccagctcgcccgcctcgtccacgacggcttcgtcggcgaggccggcgccgcc
cggctgcgccgctaccggacctggctgggtgcgatgaaggaacggcgcaccgcgctggag
accggcggcccggccgccctggtcaaggaccggcagcggatggagctggtcggcccgctg
cagcaggcatggctggaccgcatgcaggcgttgccggccgggcgtccgccggggcgtgag
ctgcgcgccgtgggctggatgctcgaggagtaccgggtctcgctgtgggcccagaagctg
ggcaccgacgggccggtctcggacgtgcggatccgcaaggccctcgacgcactggaccgg
ccgccgtcacgtcgtacgacctag
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