Nocardioides faecalis: KG111_15120
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Entry
KG111_15120 CDS
T09118
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
nfc
Nocardioides faecalis
Brite
KEGG Orthology (KO) [BR:
nfc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nfc03016
]
KG111_15120
Enzymes [BR:
nfc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
KG111_15120
Transfer RNA biogenesis [BR:
nfc03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
KG111_15120
Prokaryotic type
tRNA splicing ligases
KG111_15120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QVI58316
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All DBs
Position
3219329..3220528
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AA seq
399 aa
AA seq
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METITPKLLSWASILDQGTREQAVTTASMPFIHPHVALMPDAHLGLGATVGSVIPTLGAI
IPAAVGVDIGCGMIAVRTQLVADELPRDRRPLREAIERAVPLSAGAANRTVSREHTQRRL
DELTREAQEAGFDPGRYAKRWELQLGTLGSGNHFIEVTVDEAQRVWLFLHSGSRGVGNKI
AQHHIAVARRGCEARGVDLPHRDLAYLSEGTDEFDAYITQMRWAQHYALLNREEMMDRVV
RQFAEWVAGAPGSTVAGVADVQRTEEINCHHNYTEPEHHYGRDVWLSRKGAINAEHGRMG
LIPGSMGTASYVVRGLGDAASLRSAPHGAGREYSRTRARRTFTREQLREAMVGIEYRDTD
AFIDEIPAAYKDIDRVMADAADLVEVVHTLRQIVNVKGD
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atggagaccatcaccccgaagctgctgagctgggcttcgatcctcgaccagggcacccgc
gagcaggcggtgacgacggcgtcgatgccgttcatccacccgcacgtggcactgatgccc
gacgcccacctcgggctgggagcgacggtgggctcggtcatcccgaccctcggcgcgatc
atcccggccgcggtcggcgtcgacatcggctgcggcatgatcgcggtccgcacccagctc
gtcgccgacgagctgccccgcgaccggcgcccgctgcgtgaggccatcgagcgggccgtc
ccgctctcggcaggcgccgcgaaccgcacggtcagccgggagcacacccagcgcaggctc
gacgagctgacccgcgaggcgcaggaggccggcttcgaccccggtcgctacgcgaagcgc
tgggagctgcagctgggcacgctggggtcgggcaaccacttcatcgaggtcaccgtggac
gaggcccagcgggtctggctgttcctgcactccggctcgcgcggcgtgggcaacaagatc
gcccagcaccacatcgccgtcgcccggcgcggctgcgaggcccgcggggtcgacctgccg
caccgcgacctggcgtacctgagcgagggcactgacgagttcgacgcctacatcacccag
atgcgctgggcgcagcactacgcgctgctcaaccgcgaggagatgatggaccgggtggtg
cggcagttcgccgagtgggtcgcaggcgcacccggctccacggtggccggcgtcgccgac
gtccagcggaccgaggagatcaactgccaccacaactacaccgagcccgagcaccactac
ggccgcgacgtgtggctctcccgcaagggcgcgatcaacgccgagcacggccggatgggc
ctcatcccggggtcgatgggcacggcgtcgtacgtcgtacgggggctcggcgacgccgcg
tcgctgcgctccgcaccgcacggcgccggccgggagtactcccgcacccgggcgcgcagg
acgttcacccgcgagcagctgcgcgaggcgatggtgggcatcgagtaccgcgacaccgac
gcgttcatcgacgagatcccggcggcctacaaggacatcgaccgagtgatggccgacgcc
gccgacctggtcgaggtggtgcacacgctgcgccagatcgtgaacgtcaagggtgactga
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