Nocardioides faecalis: KG111_17505
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Entry
KG111_17505 CDS
T09118
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
nfc
Nocardioides faecalis
Pathway
nfc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nfc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KG111_17505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nfc03019
]
KG111_17505
03009 Ribosome biogenesis [BR:
nfc03009
]
KG111_17505
Enzymes [BR:
nfc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KG111_17505
Messenger RNA biogenesis [BR:
nfc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KG111_17505
Ribosome biogenesis [BR:
nfc03009
]
Prokaryotic type
rRNA helicases
KG111_17505
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
CMS1
adh_short
HEM4
UvrA_inter
DUF7853
Motif
Other DBs
NCBI-ProteinID:
QVI58725
LinkDB
All DBs
Position
complement(3731944..3733671)
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AA seq
575 aa
AA seq
DB search
MSEPADHETVTFADLGLGDRILKALSDVGYESPSAIQAETIPHLLEGRDVMGLAQTGTGK
TAAFALPILDRLDLSQKTPQALVLAPTRELALQVCEAFEKYAANLRGVSVLPVYGGQGYG
VQLSALRRGVHVVVGTPGRIMDHLDKGTLDLSKLRFLVLDEADEMLNMGFAEDVETILAD
TPEDKQVALFSATMPRQIKSLSAKYLNDPVSISIERKTRTAENITQRYLVVSYPQKVDAL
TRILEVENFEGMIVFVRTKSETETLAEKLRARGYSAAAISGDVQQTQRERTVNQLKSGKL
DILVATDVAARGLDVERISHVVNYDIPTDTEAYVHRIGRTGRAGRSGDAISFITPRERYL
LKHIEKATRSTLQQMQLPSVEAVNETRLTRFDDQITEALSSPSIEFFREVVSHYVREHDV
PELDVAAALAIVMQGDTPLLLDPEEERRRERAERRERPERPERGARGERGAGGERGPRRE
RTGPAAGLASYKIQVGKRHRVEPRQIVGALANEGGLDRRDFGRITIRPDYSVVELPADLS
SETFERLKNTRISGKLIELAKDSGPPQGGARRPRD
NT seq
1728 nt
NT seq
+upstream
nt +downstream
nt
gtgagtgagcctgcagaccacgagaccgtgaccttcgccgacctcgggctcggtgaccgg
atcctcaaggcactgtcggacgtcggctacgagtcgccgtccgccatccaggccgagacc
atcccgcacctgctcgagggtcgcgacgtgatgggcctggcgcagaccggtaccggcaag
accgcggcgttcgcgctgcccatcctggaccgcctcgacctgtcccagaagacgccgcag
gcgctcgtgctcgcgcccacccgtgagctggcgctgcaggtctgcgaggcgttcgagaag
tacgccgccaacctgcgcggcgtcagcgtgctgcccgtctacggcggccagggctacggc
gtccagctctccgccctgcgccgcggcgtgcacgtcgtggtcggcaccccgggccggatc
atggaccacctcgacaagggcaccctcgacctctccaagctgcgcttcctggtgctcgac
gaggccgacgagatgctcaacatgggttttgccgaggacgtcgagacgatcctcgccgac
acccctgaggacaagcaggtcgcgctgttctccgcgaccatgccgcgccagatcaagtcg
ctgtcggcgaagtacctcaacgaccccgtctcgatctccatcgagcgcaagacccgcacc
gccgagaacatcacccagcgctacctggtggtcagctacccgcagaaggtggacgcgctg
acccggatcctcgaggtcgagaacttcgagggcatgatcgtcttcgtccggaccaagtcc
gagaccgagacgctggccgagaagctgcgggcgcgcggctacagcgccgccgcgatctcc
ggcgacgtgcagcagacccagcgcgagcgcaccgtcaaccagctcaagtcgggcaagctc
gacatcctggtggccaccgacgtcgccgcccgcggcctcgacgtggagcggatcagccac
gtcgtcaactacgacatccccaccgacaccgaggcctacgtgcaccggatcgggcgcacc
ggccgcgccgggcgcagcggtgacgccatctcgttcatcaccccgcgcgagcgctacctg
ctcaagcacatcgagaaggccacccgctccaccctgcagcagatgcagctgcccagcgtg
gaggcggtcaacgagacccggctgacccgcttcgacgaccagatcaccgaggcgctgtcg
tcgccgagcatcgagttcttccgcgaggtggtcagccactacgtccgcgagcacgacgtc
cccgagctcgacgtcgccgcggcgctggcgatcgtgatgcagggcgacaccccgctgctg
ctcgaccccgaggaggagcggcggcgcgagcgtgccgagcgccgcgagcggcccgagcgc
cccgagcggggtgcccgcggcgagcgcggcgcaggcggcgagcgtggcccgcggcgcgag
cggaccgggccggcggccggcctggcgtcgtacaagatccaggtgggcaagcggcaccgc
gtcgagccccgccagatcgtcggcgccctggccaacgagggtggcctggaccgtcgcgac
ttcggccggatcaccatccgccccgactactccgtggtcgagctgcccgccgacctgtcg
tcggagaccttcgagcggctcaagaacacccggatcagcggcaagctgatcgagctggcc
aaggactccggcccgccccagggcggcgcccgccgtccccgcgactga
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