Aspergillus fischeri: NFIA_017240
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Entry
NFIA_017240 CDS
T01070
Name
(RefSeq) mRNA cleavage factor complex component Pcf11, putative
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
nfi
Aspergillus fischeri
Pathway
nfi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nfi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
NFIA_017240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nfi03021
]
NFIA_017240
03019 Messenger RNA biogenesis [BR:
nfi03019
]
NFIA_017240
Transcription machinery [BR:
nfi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
NFIA_017240
Messenger RNA biogenesis [BR:
nfi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
NFIA_017240
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pcf11_C
Pfc11_Clp1_ID
CID
zf_PCFS4
VHS
DUF7340
UBZ_FAAP20
Motif
Other DBs
NCBI-GeneID:
4592125
NCBI-ProteinID:
XP_001264920
UniProt:
A1D3N0
LinkDB
All DBs
Position
Unknown
AA seq
654 aa
AA seq
DB search
MSSGLASDEVAEDYKNSLEDLTTNDRFQISNLTVIAKENTEHAMAISRVLENHIRTTPPA
QKLPALYVVDSIVKNVGTPYTLFLGRNMYQTFMNAYTLVDSQTRRKLDEMLKTWKESVPG
SLDTRPVFPPEITRSIESALIKARTAALQQQQARSQQDILNRGRVGTPPHGWTNNTTLNQ
SAARLAPSTSQNGHAHQVRNGHTQNHHAALDPRSTPTPQPSQRSEVDLAALNRDIEALIA
AARSDFANNPLDPSVQQRLKALLDLQGILQRQELTQEQLKLVRDQVSALTPKSALSVPQS
VPPTIPAMPTPSMATPPVQTLSQPLQQLLNPGTLAELIKATAARQQPTPPPQVHSILPQM
PVASSTPQPAAMPATENPLIAALRARGLLPPASAPPAPTTAPPSNLASAFPFIVPGQVRF
LTPVPTMPQAPNPSSITINVQMNTASIKIPREGLIASLYEARSNRCGTCGRRFFATEEGK
EKKARHLDWHFRTNQRMADAAKRAQNRSWYVDERDWIKSREAGDDEDPAEAESTSAGAAG
AESDSTKKGPPKQWIRAPNDATLRNTPCPICQETFESTWSEEVQDWIWQDAVKVGNRIYH
ASCYAEVTKDGTTTAAGRGTPSARTGTPDSVLGKRKAEGTDSPGSNVRVKMEPV
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtctgggctcgcctctgatgaggtcgctgaggattacaagaactctctggaggat
cttaccacgaacgacaggttccagatcagcaacttgaccgtcatagccaaagagaatact
gaacatgctatggccatctccagagttttggagaaccacattcgaacaacaccgccagct
cagaagcttcctgccttgtatgtagtcgactccattgtgaagaatgtgggaactccctac
acacttttcctgggtcgcaatatgtatcagactttcatgaatgcctacacgttggtggac
tcgcaaacccgcagaaagctggacgaaatgctcaagacatggaaggaatctgttccgggg
tcactagatacaagacccgtctttcctccggaaattacacgcagcattgaaagcgctctg
atcaaggcgagaaccgcggctctacagcagcagcaggccaggagccagcaggatatactt
aaccgcggccgggtgggcactcctcctcatggctggacgaacaacactacgctcaaccag
agtgcggctcggctcgcgccttccacaagtcagaatgggcatgctcatcaggtccgaaat
ggacacacgcaaaatcatcacgctgcgttggaccctcgatctactccaacccctcaacct
tcgcagcgctcggaagtggatcttgcggcattgaatcgcgacatcgaggcattgattgca
gctgcccgaagtgatttcgccaataaccctcttgacccttctgtgcaacagcgtctcaaa
gctctactagatttgcaaggcatcctccagcgtcaagagctcactcaggagcagctgaag
ctggtccgtgaccaggtctctgcactcactccaaagtctgctctttcagttccccaaagc
gttccgccaaccattccagctatgccaacacccagcatggccactcccccagttcagacc
ctttcacagcctcttcagcagctcctcaacccgggaacattagctgagcttatcaaagca
actgctgcacgccagcaacccaccccaccaccccaagtccacagcattctaccgcagatg
ccagtagctagcagcacgccacaaccggcggccatgccggcgaccgagaacccgttaatt
gcagctctacgagcgcgtggcctcttgcctcccgcttccgcacctcctgcccctaccact
gctccaccgtccaaccttgcctctgcctttccctttattgtacctggtcaggtgcgattt
ttaactccagtgcctactatgcctcaggctcctaatccctcgagtattactatcaacgtg
caaatgaatacggcatccattaaaataccgcgagagggactaatagccagtctctacgaa
gcgagatctaaccgttgtgggacatgtggccgtcgattctttgcaacagaagaaggaaaa
gaaaagaaagctcgccatctggactggcactttcggaccaaccaacggatggcggacgct
gccaagcgagcgcagaaccgcagctggtacgttgacgagcgggattggataaaatcccgc
gaagccggagacgatgaggatcctgcagaggcagaatctacaagtgccggtgctgcaggt
gccgagagtgattcaaccaagaaagggccgcccaagcaatggatccgtgctcccaatgat
gctactttgcgcaacacgccctgtcccatttgtcaggagacgtttgagtcgacatggtcg
gaggaagtccaagactggatatggcaggatgccgtcaaggttgggaaccggatataccac
gcaagctgctatgcggaagttacgaaggacgggacgactacggctgcaggtcggggtacg
ccttcggcacggactggaacgccagattccgtgttgggcaagaggaaggcagaggggacc
gactctcccgggtcaaatgtccgagtcaagatggagcctgtgtga
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