KEGG   Aspergillus fischeri: NFIA_018420
Entry
NFIA_018420       CDS       T01070                                 
Name
(RefSeq) small nucleolar ribonucleoprotein complex subunit (SOF1), putative
  KO
K11806  DDB1- and CUL4-associated factor 13
Organism
nfi  Aspergillus fischeri
Brite
KEGG Orthology (KO) [BR:nfi00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:nfi03009]
    NFIA_018420
   04121 Ubiquitin system [BR:nfi04121]
    NFIA_018420
Ribosome biogenesis [BR:nfi03009]
 Eukaryotic type
  90S particles
   Other 90S particles
    NFIA_018420
Ubiquitin system [BR:nfi04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     NFIA_018420
SSDB
Motif
Pfam: WD40 Sof1 WD40_Prp19 WD40_CDC20-Fz WDR55 WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd Beta-prop_EIPR1 Beta-prop_RIG_2nd EIF3I WD40_MABP1-WDR62_2nd Beta-prop_TEP1_C WD40_RFWD3 Beta-prop_WDR75_1st Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_IFT122_1st WDR90_beta-prop_4th ANAPC4_WD40 Beta-prop_IFT140_1st WD_LRWD1 Beta-prop_WDR19_1st WD40_MABP1-WDR62_1st Beta-prop_SCAP Beta-prop_DCAF12 NBCH_WD40 eIF2A Ge1_WD40
Other DBs
NCBI-GeneID: 4591420
NCBI-ProteinID: XP_001265038
UniProt: A1D3Z8
LinkDB
Position
Unknown
AA seq 457 aa
MLLYVSNKFTQKIKAISRSTASQQAPGSAVVRQPRNLDPAQHPFERAREYTRALNAVKLE
RLFAAPFVGQMGEGHVDGVYTMAKDPGSLQRFASGSGDGVVKVWDLTTQGEVWNTQAHEN
IVKGLCWTPERKLLSCASDKTIKLWDPYNSSPEAPPLGTYLGQSAFTGVSHHRNLPYFAA
SSSQISIYDLSRPSSTPSQVLHWPTSVDTITSLAFNQTETSIIGSTAIDRSVIMYDLRTS
LPVHKLVLRLASNAISWNPMEAFNFAVANEDHNAYIFDMRKMDRALNVLKDHVAAVMDVE
FSPTGEELVTASYDKTVRLWSRAHGHSRDIYHTKRMQRVFSAKFTPDNKYILSGSDDGNI
RLWRANASDRSGIKSARQRQKLEYDQALITRYSHMPEIRRIKRQRHVPRTVKKAAEIKRE
ELAAIKRREENVRKHAKKGALPPRRSEREKMILTHEQ
NT seq 1374 nt   +upstreamnt  +downstreamnt
atgcttttatatgtctctaacaaatttacacagaaaatcaaagcaatttctcgctccacg
gcgtcccagcaggcgccgggctctgccgtcgttcgacagccccgaaatctggatccagcc
cagcatccattcgaacgagctcgtgaatacacccgtgcattaaatgctgtcaagctagag
agactgtttgccgcgccatttgtgggccagatgggcgagggtcatgtggatggtgtttat
acaatggccaaagatccgggatcgttacaacggtttgcgagtggcagtggtgacggtgtt
gtcaaggtttgggatttgacaactcaaggtgaagtgtggaacactcaggcacatgaaaat
attgtcaagggattgtgctggactcccgaacggaaattgctctcgtgcgcaagcgacaag
accatcaaactgtgggacccatacaactcctcacctgaagcaccaccattgggaacgtac
ctaggccaaagcgcttttactggggtctcgcatcaccgaaatctgccatacttcgctgcg
tcgtcttctcagatttctatctacgatttgtcgcggccgtcctcgacaccatctcaggtc
cttcattggcccactagcgtggatactatcacctcgcttgccttcaatcagacagaaaca
tccatcattggatcaacagccattgatcgatccgttatcatgtatgatcttcgtacttca
ttgcctgttcacaaacttgtcctacgtttggcatcgaacgccatttcctggaacccgatg
gaggcattcaactttgcggtggccaacgaagatcataatgcttacattttcgacatgagg
aaaatggatcgtgctctgaatgtgctgaaggatcacgtggctgcggtcatggatgtcgag
ttcagcccgactggcgaggaactcgtgacggcttcttatgataaaacggtgcgcttgtgg
agccgagctcatgggcattctcgcgacatttaccataccaagagaatgcaacgggtcttc
tccgccaaatttacgcccgacaacaagtacattctttccgggtcagacgacggcaacatt
cgactctggcgtgcgaacgcctccgaccgtagcggcatcaagagtgcccgccagagacag
aagttagaatatgaccaggcactaattaccaggtactcgcatatgcctgaaatccgaagg
atcaagcgccagcgtcatgtgccaagaaccgtgaagaaggcggcagagatcaagagagaa
gaactcgctgctattaagagacgtgaggagaatgttcgcaagcatgctaagaagggtgct
ctgccaccgagacggagcgagcgtgagaagatgatcttgacacacgagcaataa

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