Aspergillus fischeri: NFIA_026640
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Entry
NFIA_026640 CDS
T01070
Name
(RefSeq) nonsense-mediated mRNA decay factor (Upf2), putative
KO
K14327
regulator of nonsense transcripts 2
Organism
nfi
Aspergillus fischeri
Pathway
nfi03013
Nucleocytoplasmic transport
nfi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nfi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
NFIA_026640
03015 mRNA surveillance pathway
NFIA_026640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nfi03019
]
NFIA_026640
Messenger RNA biogenesis [BR:
nfi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
NFIA_026640
mRNA cycle factors
P-body specific factors
NFIA_026640
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
DUF1180
Motif
Other DBs
NCBI-GeneID:
4587983
NCBI-ProteinID:
XP_001261487
UniProt:
A1DCN0
LinkDB
All DBs
Position
Unknown
AA seq
1153 aa
AA seq
DB search
MNEPGLERVSPNYVSDDFTDLFPVSSSLDSSLKKNTAFIKRLRTGINASVLQTFLTDIRT
LSLHKYLSEIISACYEGLCKLKSPGEIAAGVEVTSALHQRFGPDEFTRQIGWLLGRGLST
PDKSQLRTLSQELREREEKERLSRHRVLLRVVTELWLVGVLRTLDDIERPDDLGAKGKDG
AVSIGGKATDAVSKPKTTPSAAKDQDKEAEPFPLEVLKDLLGHDREHANLPLAVLFAKSF
SWDILGVNMVDENRKTVDVDGTTTSVAPADTVNGGDDATAAENDPPLVSEKTQLRFRSIL
SRYLEDVKAHVVRDQRALAAQSRRNAEAYVKSGEIFEDRQANFDKQSKSLEKLVANTQVL
CEVLGVEMPALAEQEAADSASSGGIGLVKTSEYLRGQGEGPGIWEDEEERRFYENLVDLK
GKVPSVLLEDGKKKKPDSDDAAKKKTDGEATPDWSSEKPENASQIPTSEEKSAAEAEDQS
TAIASKTVGAQVDALLARLPELQTKDQVDQLALEFCFLNSKASRNRLIKAVSDVPKGRVD
LLPLYSRLVATLGQYLQDIPQGLITYLDEEFRSLQRRKSKEFLGQVRMTNIRYFAELTKF
GVVPEHIIFHCFKVSLDDFSRMNIEIIGHLLENCGRYLLRNPETSPRMASFLEKLGRKKT
VQHLGQQERMIIENAMYYVDPPPRPAIQQKERTPMESYIRKLIYLDMNKRNYTKILKSIR
KLHWEEQDVVDILERVFSKPVKVKYGNIHLLAILVSALYRYHQDFVISVVDNILEQITLG
LEQNDFKFNQKRVAEVKYLGELYNYKMIDSPVVFDTLYRIVTFGYEGGTPIPGKLNPLDL
PDDFFRIRLVCTLLDTCGHCFDRGSAKKKLDFFLIFFQYYYLTKDPLPMDVEFLIQDTFA
MARPQWKLMTDLQEATQLFSEAVAQNYKTPDSERPMEADEDDAESSSSDDGLEDDAIPEA
EEEQESSDEAEVSGPNAEQDTDSESEDEQIFVTRQEEERDPEVEAEFDREFEKMMAESME
SRRFERKAVFDIPLPMRRAGREASAGDAVTEAPPERTNTMAFSLMTKKGNKQQTRTIDLP
SDSSFAIAMKSQQQADREEQQRIKNLVLNYEMTNEAENNTEVLEKRTSPKLDKPGSNRTA
FRSRKLQLSDVNW
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgaacgagcctgggctggagagagtgtcacctaactacgtatcggacgattttacagat
ctctttccagttagcagttcgcttgattcgtcgctgaagaagaatacggcctttatcaag
cgtctccgaacaggaatcaatgcttcagtcctgcaaaccttcttgaccgatatccgcact
ttgtcgctccacaagtacctttccgagattatctccgcatgctacgagggtctctgcaaa
cttaagtcgcccggggagattgccgcgggcgtggaagtcacaagcgcattgcatcagcga
ttcggaccggacgagttcacgaggcagatcggttggctgctgggtcgcggcctcagcaca
cctgacaagtcgcagctcagaaccctcagccaggagttgcgcgagcgtgaagagaaagag
agactttccagacatcgggtgctgcttagagtggtcacggagctatggcttgtcggagtt
ctgagaaccctcgatgatatcgagagaccagatgacctgggcgccaagggcaaggatggt
gcggtcagtatcggtggaaaggcgacagacgccgtgtctaagcctaagacgacgccgtct
gcagccaaagatcaagacaaagaagccgagccgttccctctggaggtcttgaaagatctt
cttggtcacgatcgcgagcatgccaatctgccacttgccgtgttatttgccaaaagcttt
agttgggatattctaggagtgaatatggttgacgaaaaccggaagacggttgatgtggat
gggaccacgacctctgttgctcccgcagatacagtgaatggcggagacgatgcgacggcc
gccgagaatgacccgccgcttgtgtcggagaaaacgcagcttcgcttcaggagtattttg
agccggtatttggaagatgtgaaggcgcacgtcgttcgcgaccagagagcattggcagca
cagagccgtcgaaatgcggaagcctacgtcaagagtggtgagatatttgaggatcgtcaa
gcgaatttcgacaagcagagcaagtcattggagaaactggttgcgaacactcaggtattg
tgcgaggttctaggggtggaaatgcccgccttggctgaacaggaagcggctgattctgct
tcgagtggtggaatcgggcttgtgaagacttcggaatacctgcgtggccagggcgaaggt
cccggtatttgggaggatgaagaggaacggcgcttctacgaaaacttggttgatctcaaa
ggcaaggtaccgtcggttctgcttgaggatggcaagaagaaaaagcccgactccgacgat
gctgcaaagaaaaagacagacggcgaagctacccccgattggagttcagagaagcctgag
aacgcaagccaaatcccaacgtcggaagagaagtctgctgcggaggcggaagatcagtct
accgctatcgccagcaagaccgttggagctcaggtagatgctctcttggctagactcccc
gaacttcaaacaaaagaccaagttgatcagctggcactcgagttctgctttctcaactcc
aaggcgtcgagaaacaggctcatcaaggctgtgtcagacgtcccaaagggtcgagtcgat
cttttgccattgtattcccgactggttgcaaccctcggacagtatcttcaggatattcct
caaggtttaataacttacctcgacgaagagtttcgcagtcttcaacgtcggaagtccaaa
gaattcctcggccaggttcggatgaccaatatccgctatttcgcagagttgaccaaattc
ggtgtggttccggagcatatcatctttcactgtttcaaggtttccctcgatgacttttca
cgcatgaacattgagattattggtcatctgctcgaaaactgcggacgctacctgcttcgg
aatccagaaacatccccgcggatggcttcgttcttggagaagctcggcaggaagaagaca
gtccaacatctgggtcagcaagaaagaatgattatcgagaacgcaatgtactatgtcgac
ccgccgccgcgacctgctattcaacaaaaggagcgcacgcctatggaatcctacatccgc
aagctgatttacctggacatgaacaagcgtaattacaccaaaattttgaaatcaattcga
aaactccactgggaagaacaagatgtggtcgatatcttggagcgtgtcttcagtaagccg
gttaaggtcaaatacggcaatatccaccttctcgctatccttgtcagtgcactttacagg
tatcaccaggacttcgtgatcagtgttgtagacaacatcctcgagcagatcacgctggga
ctcgaacagaacgatttcaagttcaaccagaagcgtgtagctgaagtcaaatacctcggg
gaattgtacaactacaaaatgatcgactcacccgtggtctttgatacgttgtaccggatt
gtcactttcggctacgaaggtggcactccgattcctggaaagctcaacccactagatcta
ccagacgatttcttccgcattcgcctagtctgcactctgctggacacttgtggtcactgt
tttgatcgtgggtctgctaaaaagaagttggatttcttcttgatcttcttccagtactat
tatcttacaaaggaccctttgcctatggacgttgaatttttgatccaggacaccttcgct
atggctcgtcctcaatggaagttgatgactgatttgcaggaggccacgcagctgttcagt
gaagcagtcgctcagaactacaagactccggattccgagaggcctatggaggcggatgaa
gatgatgcagaaagcagctcgtctgatgacggtctcgaggatgacgcaattcccgaggct
gaagaagaacaagagtcgagcgatgaagctgaagtctctggccccaatgccgagcaagat
actgacagtgaatccgaggacgagcagatctttgttactcgtcaggaggaggagcgtgat
cctgaggtcgaggctgagtttgaccgcgagttcgagaaaatgatggcagagagtatggag
tccagacgattcgaacgcaaggctgtgtttgatattcctcttcccatgaggcgcgctggc
cgtgaggcttcggcgggtgatgcagtgactgaagcgcctcccgagcgaaccaatacaatg
gccttctctttgatgacaaagaagggaaataagcagcagactcgtacaattgatctccca
tctgactctagctttgcaatcgccatgaagagtcagcagcaagcggatcgtgaagaacag
caacgcattaagaacttggtgctcaattacgaaatgactaacgaggctgaaaacaatact
gaagtgcttgaaaagcgtacctctccgaagctcgacaagcctggctcgaaccgcacagct
ttccggtctagaaagctccagctcagcgatgtcaattggtag
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