Aspergillus fischeri: NFIA_048940
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Entry
NFIA_048940 CDS
T01070
Name
(RefSeq) ATP dependent RNA helicase (Sub2), putative
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
nfi
Aspergillus fischeri
Pathway
nfi03013
Nucleocytoplasmic transport
nfi03015
mRNA surveillance pathway
nfi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nfi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
NFIA_048940
09122 Translation
03013 Nucleocytoplasmic transport
NFIA_048940
03015 mRNA surveillance pathway
NFIA_048940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nfi03019
]
NFIA_048940
03041 Spliceosome [BR:
nfi03041
]
NFIA_048940
Enzymes [BR:
nfi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NFIA_048940
Messenger RNA biogenesis [BR:
nfi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
NFIA_048940
Spliceosome [BR:
nfi03041
]
Complex C
Other components
EJC/TREX
NFIA_048940
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
NFIA_048940
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Ned1_M
Motif
Other DBs
NCBI-GeneID:
4583967
NCBI-ProteinID:
XP_001257453
UniProt:
A1DL85
LinkDB
All DBs
Position
Unknown
AA seq
441 aa
AA seq
DB search
MSHEEDLIDYSDEELQTTDAAATTAAPAANGAQDKKGDLTVSGGRPDKKGSYVGIHSTGF
RDFLLKGELLRAITDCGFEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQL
EPVPGECSVLVMCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGTPIQKDIEVLSNKESY
PNIVVGTPGRLNALVREKKLSLRNVKAFVLDECDKMLDQIDMRRDVQEIFRATPADKQVM
MFSATLSQEIRPICKKFMRNPLEVYVDDDTKLTLHGLQQYYIKLSESEKNRKLNELLDSL
EFNQVIIFVKSTLRANELDKLLRECNFPSIAVHSGVSQEERIKRYKEFKEFNKRICVATD
VFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLSISFVSSEEDEKVLKEIEK
RFEVALPEYPEGGVDSSTYMA
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atgtctcacgaggaggatctcatcgactactccgacgaggagcttcagaccactgacgca
gcagccaccaccgctgcccccgccgcaaatggggcccaggacaagaagggcgacttgaca
gtttccggcggtcgcccggataagaagggaagttatgtcggtattcactcgaccggtttc
cgcgacttcttgctcaagggagagcttctacgtgccatcaccgattgcggtttcgaacat
ccatcggaggtccagcaagtctgcattcctactgcaatcctgaacgtcgatgttctctgc
caggccaagtctggtcttggaaagactgcagttttcgttcttactacactccaccaactc
gaacccgtacctggagaatgctcggtccttgtcatgtgtcacactcgtgaattggcgtac
cagatcaagaatgaatacgccagattcagcaaataccttcctgatgtgaagaccgctgtc
ttctacggtggtacgccgatccagaaagatatcgaggttttgtcgaacaaagagtcatat
ccgaacattgttgtcggcacacctggtcgtctcaatgctctggttcgcgagaagaagctt
tctctgcgcaacgtcaaggcgttcgtgttggatgaatgtgataagatgcttgatcagatc
gacatgcgccgggatgtccaggagattttccgtgccacccccgccgataagcaagtcatg
atgttcagtgcaaccctctcccaagagatccgacccatctgcaagaagttcatgagaaac
cctcttgaagtttacgtcgatgatgacaccaagctcacactccacggtctccaacaatac
tacatcaaactcagtgaatcggagaagaaccgtaaactcaacgaacttctggacagcctt
gagttcaaccaagtcattatcttcgttaagagcacgctgcgcgcgaacgagttggacaag
ttgttgcgcgaatgtaacttccccagtattgcggtgcactctggtgtcagccaggaggag
cgcatcaaacgttacaaggagttcaaggagttcaacaagcgtatctgtgtcgccacggat
gttttcggtcgtggtattgatattgagcgtatcaacctggctatcaactacgacttgcct
gctgatgccgattcgtatctgcaccgtgttggccgtgctggtcgttttgggaccaagggt
ctatccatctcgtttgtcagcagcgaggaggatgagaaggtgctcaaggaaattgagaag
cgatttgaagttgcccttcctgaatatcccgagggcggtgtcgactccagcacttacatg
gcgtga
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integrated database retrieval system
