Aspergillus fischeri: NFIA_071370
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Entry
NFIA_071370 CDS
T01070
Name
(RefSeq) exosome complex exonuclease Rrp4, putative
KO
K03679
exosome complex component RRP4
Organism
nfi
Aspergillus fischeri
Pathway
nfi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nfi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NFIA_071370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nfi03019
]
NFIA_071370
Messenger RNA biogenesis [BR:
nfi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
NFIA_071370
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
NFIA_071370
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRP4_S1
ECR1_N
KH_6
RRP40_S1
ECR1_N_2
EXOSC1
Motif
Other DBs
NCBI-GeneID:
4590509
NCBI-ProteinID:
XP_001263863
UniProt:
A1D8C2
LinkDB
All DBs
Position
Unknown
AA seq
390 aa
AA seq
DB search
MAITILPPVVEDVNSPHPDSDFDSMSIDSDGGVDLTSRGGSRPSKRSRLVEGTKIGAGIV
TPGEVVTDDPQWMRGHGTYSNPLSTSIIATVAGTVQKTNKLLSVQPLRARYIPEIGDLVV
GRIVEVQSRRWKVDIAAPLLAQLPLSAINLPGGILRRRTSADELQIRTFFSEGDLVVAEV
QSVHSDGSASLHTRSLKYGKLRNGVFLAVTGTGGSGASSSTVKGGPGAGTASAGAMGTSG
TGGVVRARRQQWTVNTANGGGEVNIILGVNGYIWIAKHADGAAAASSTTENVSITRLEEM
VSSSIYSSQNDEIPPQTRREIARLAQCIRVLVQGGVRVDEETVMRAYDASLQVDLEVGDD
EDEDERRREGREYLEGVKASGILALAMQAR
NT seq
1173 nt
NT seq
+upstream
nt +downstream
nt
atggccatcactattctgcctcccgttgtggaggatgtcaattctccccatccagattca
gacttcgattcaatgtcgatagactcagacggaggagttgatttgacttcaagaggaggc
tctcgaccaagcaaacggtcccgcttagtggaagggacaaagattggcgcaggaattgtg
acaccaggtgaagtggtgacggatgatccacaatggatgagaggtcacggtacctactca
aatccgctctcgacttctatcattgccactgttgctggtactgtacagaaaaccaacaaa
ctgctctccgttcagccgctgcgggctcggtatatcccagaaatcggtgatctggttgtt
ggacgcattgtggaggttcagtcacgacgatggaaggtcgatatcgccgctcctctccta
gcacaactacccctctccgccatcaacctgcctggcggtatcctccgtcgacggacaagc
gcggatgaactgcagattcgaaccttcttcagcgaaggggatttggtggttgcagaagtt
cagagcgtgcattctgacggctcagcctcattgcacacgcgatcgctgaaatacggcaag
cttagaaatggcgtgttcctcgctgttacgggaaccggtggtagcggagcatcgagttcg
acagtgaagggaggccctggagcgggaactgcctctgcaggggcgatgggcacctcaggc
acgggtggtgtggttcgcgcccggagacaacagtggacggtcaacacggcgaacggaggc
ggcgaggtgaacattatactcggggtgaatggttacatctggatcgcgaagcacgccgac
ggcgcggccgcagcttcctctacgacggagaatgtatccattacccgcctggaggagatg
gtatcgagctctatctattccagccagaacgatgagattccaccgcagacacggcgcgag
attgcacgcctggcgcaatgtattcgcgtgctggttcaaggcggagtacgtgtggatgag
gaaactgtcatgagagcatacgatgctagcttacaggtcgatcttgaagttggtgatgat
gaggatgaggacgagcggagaagagaaggaagggagtatctcgagggtgtcaaagcttca
gggatcctagctttggccatgcaagcacgatga
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