Aspergillus fischeri: NFIA_073520
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Entry
NFIA_073520 CDS
T01070
Name
(RefSeq) 3'-5' exoribonuclease (Csl4), putative
KO
K07573
exosome complex component CSL4
Organism
nfi
Aspergillus fischeri
Pathway
nfi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nfi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NFIA_073520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nfi03019
]
NFIA_073520
Messenger RNA biogenesis [BR:
nfi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
NFIA_073520
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
NFIA_073520
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
IFTAP
Motif
Other DBs
NCBI-GeneID:
4586264
NCBI-ProteinID:
XP_001259333
UniProt:
A1DDH9
LinkDB
All DBs
Position
Unknown
AA seq
249 aa
AA seq
DB search
MASSLPSLAIPGQRLGPVSSYSAGPGTHVQNANIYASIAGPVVVQQAQPSSKVKSILSVS
RNLPRKTDPSTSTTPAYTTTTTKPKLRYNTLPAVDSIVLARVTRVQKRQATVSILVVLDE
SAGSQNPDPSKTASDNDNIVSILTSAANPENHSSSDELRFQALIRKEDVRAVEKDRVVMD
EMFRVGDIVRGSVISLGDQSFYYLTTARNDLGVVMARSEAGNMMFPVSWKEMRDPVTGAA
ELRKVARPF
NT seq
750 nt
NT seq
+upstream
nt +downstream
nt
atggcaagcagtctaccctctttggctattccaggtcagcgcctggggccagtgtcttct
tactctgcaggaccaggtacccacgtacagaatgccaacatttatgcatccattgctgga
ccagtggttgtccaacaagctcaacccagctccaaagtaaaatctatcctcagcgtctcg
cggaacttgccgaggaaaacggacccttctacctcgaccacacctgcatatacgaccacc
actacgaaacccaaactgaggtacaacactctccccgctgtcgactcgattgtgttagca
cgcgtcacccgtgtccagaaacgccaggccacagtctccatcctcgtcgtgctcgacgag
tcggctggttcccaaaaccccgatccgtcgaagacggcttcagacaacgacaacattgtc
tccatcctcacttcggcggccaatcctgagaatcacagtagctccgacgagcttcgcttc
caggcgcttatccggaaggaagatgtgcgtgctgttgagaaggaccgcgttgtgatggat
gagatgttccgtgttggagatattgtgcgtggttccgtcatttccctgggtgatcagagt
ttctattatcttaccactgcgcgcaatgaccttggcgtcgtcatggcacgtagcgaggct
ggcaatatgatgtttccggttagctggaaagagatgagagaccccgtcactggtgctgca
gaattgcgaaaggttgctcggccgttttga
DBGET
integrated database retrieval system
