KEGG   Aspergillus fischeri: NFIA_087200
Entry
NFIA_087200       CDS       T01070                                 
Name
(RefSeq) small nuclear ribonucleoprotein
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
nfi  Aspergillus fischeri
Pathway
nfi03018  RNA degradation
nfi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:nfi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    NFIA_087200
  09123 Folding, sorting and degradation
   03018 RNA degradation
    NFIA_087200
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:nfi03019]
    NFIA_087200
   03041 Spliceosome [BR:nfi03041]
    NFIA_087200
Messenger RNA biogenesis [BR:nfi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     NFIA_087200
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     NFIA_087200
Spliceosome [BR:nfi03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    NFIA_087200
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 4587219
NCBI-ProteinID: XP_001260661
UniProt: A1DHA7
LinkDB
Position
Unknown
AA seq 119 aa
MLPLGLLTAAQGHPMLVELKNGETLNGHLANCDNWMNLILKEVVQTSPEGDRFFRLPEVY
VRGNNIKYLRIPEEIVEMVKEQQQSQPQNRNRGGREGRGDRGRGGGRGGRGRGRGRGGS
NT seq 360 nt   +upstreamnt  +downstreamnt
atgttaccattgggtcttctgacggccgcgcaaggccaccccatgcttgtggagctcaag
aacggcgagacactgaacggacatcttgccaactgcgataactggatgaacttaatactc
aaggaggttgttcagactagccctgaaggcgaccgcttcttcagattaccagaggtctac
gtgcgaggaaacaatatcaaatacttgcgaatcccggaggaaatcgtggagatggtcaaa
gaacagcagcagagccagccgcagaatcgcaaccgtggtggccgtgagggcaggggcgat
agaggccgtggtggtggccgtggcggccgaggtcgcggccggggtcgtggtggcagttag

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