Aspergillus fischeri: NFIA_104020
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Entry
NFIA_104020 CDS
T01070
Name
(RefSeq) exosome complex exonuclease exoribonuclease (Rrp44), putative
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
nfi
Aspergillus fischeri
Pathway
nfi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nfi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NFIA_104020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nfi03019
]
NFIA_104020
Messenger RNA biogenesis [BR:
nfi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
NFIA_104020
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
Rrp44_CSD1
Rrp44_S1
OB_Dis3
PIN_4
CSD2
OB_HELZ2
Dis3l2_C_term
Motif
Other DBs
NCBI-GeneID:
4593792
NCBI-ProteinID:
XP_001266811
UniProt:
A1CWB2
LinkDB
All DBs
Position
Unknown
AA seq
1034 aa
AA seq
DB search
MKSLRREFSSDPQAANVTSKVFVRSTKSGKVQKIVRELYLRQDIPCSSKLCSLCPTIAPA
DANGNIAPFVLSDQPAGTSAFPRGHYLVPDTNALLNGMDLFEHTGAFYDVIILQTVLEEL
KNQSLPLYNRLLSLIKTDEKRFYLFFNEFRLETHVRRGQNESINDRNDRAVRAVAKWYSE
HLRSTLKRGKKEKSVPAIVVITDDKENLRKAKEEGVTALSLSDYVSGLEDADRLLDMISE
AREARDAKGARGELFYPEYYSMSKIMTGLRAGTLHQGVFSVSPYNYLEGSVNVAAFDKPL
LILGRDNSNRAIAGDVVVIEVLPKDQWKSPSTKLVDEEAVTRNDNPEAEDNEEVVTEKER
KALQEEVKKAHGKHSEGRPQPTAKVVGVIKRNWRQYVGHVDQGSTGASASSGRRQQNVFV
LPMDKRIPKIRVRTRQASDLLGQRILVTIDAWDRDSRYPTGHFIRSLGELETKGAETEAL
LLEYDVQYKPFPKAVLDCLPPEGHDWRVPADKEHVGWKGRRDLRDILVCSIDPPGCQDID
DALHARALPNGNFEVGVHIADVSHFVKPNNAMDLEASVRGTTVYLVDKRIDMLPHLLGTD
LCSLKPYVERYAFSVLWEMTPNAEVVSAEFTKSVIRSREAFSYEQAQMRIDDPSQNDELT
QSMRTLLRLSKILRQKRMDAGALNLASPEVRIETDSDEVGDPLTDVKTKAMLATNSLVEE
FMLHANITVAAKIYDSFSQTALLRRHATPPPQNFEELINQLSKKRNLELDVSSSRALADS
LDRCVDPENPFFNTLVRILATRCMTSAEYFCAGAHAESEFRHYGLASPIYTHFTSPIRRY
ADLLVHRQLAAAIGYEGEDGRAQVEGVMTRNRLEDICRNINYRHRNAQFAGRASIEYYVG
QALKARGEKMAADGVDAGIEEEGYVMRVFENGVVVFVPRFGIEGVVRLEDFVLSGESAVR
SVEERRELLVRRESDFDGEEYTLRVSEKGHPEKERGVTVELFQRVKVNVSSVKEEGGRGA
GKRRVRILILGAGN
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atgaagagccttcggagggaattctcctctgatccgcaggccgccaatgtcaccagcaaa
gtcttcgtcaggtccacgaaaagtggaaaggtgcagaagatcgtacgtgagctttatctg
agacaggatattccttgctcgtccaagttatgttcgctatgtcctacaatcgcgccagca
gatgcgaatggcaacattgcgcctttcgtcctctccgatcaacccgctggcacgagcgct
ttccctcgcggtcactacctcgtccctgatacaaacgcgctgctgaatggtatggatctc
tttgaacatacgggagctttctacgacgttatcattcttcagacggtcctcgaggaactc
aagaaccagtcgctgccgctctacaaccgcttgctttctttaattaagacagacgagaaa
cggttttacctattcttcaatgagttcagattggaaacgcacgtgagaagaggtcagaat
gagtccatcaatgacagaaatgaccgagcagtacgggcagtggcaaaatggtactctgag
caccttcgcagcacgctgaagaggggcaagaaggagaagtcggtaccagcaattgtcgtc
attacggacgataaggaaaatctccgcaaagcaaaggaagaaggtgtgacagcgctgtcg
ctgtcagactacgtctctggcttggaggacgccgaccggctactcgacatgatcagcgag
gcgagggaagcaagggacgcaaagggtgctcgcggcgagcttttttatccagagtattac
tcgatgtcgaaaattatgactggactgagggctggcactctgcatcagggcgtcttcagt
gtctcgccgtacaactacttggaagggtctgtgaatgtcgcagcttttgataagccactc
ctcatcctgggtcgtgataatagcaatcgtgctattgcaggcgacgtcgttgttattgag
gtcttaccgaaggatcagtggaagtcaccatcgacgaagctcgttgacgaagaagcagtc
acgcggaacgacaatcccgaggcggaagataatgaagaggtagtgacagaaaaggagcgg
aaggctctgcaggaagaggtgaagaaggcgcatggcaagcactctgaaggaaggccgcaa
cccacagctaaggttgtgggtgtcatcaagcggaactggcgccagtacgtcggacatgtt
gatcaaggttcgacaggtgcgtcagccagctctggacggcggcaacagaacgttttcgtc
ttgcccatggataaacgcattccaaagatccgggtccgcactcggcaggctagcgacctg
ttgggccagcggattttggtcacgattgacgcctgggatcgcgattctcggtatcctact
ggacatttcattcgctctctaggagaactagagaccaaaggagcagagacggaagcgcta
cttcttgagtatgacgtgcagtacaaaccgttcccaaaagccgttctggattgccttccg
ccagaaggtcacgactggagagttcctgccgacaaggaacatgtgggttggaaagggcga
agagatctgcgggatattctggtctgcagtattgatcctcctggatgtcaagatatcgat
gacgccctgcacgcgcgggccttgcctaacggtaattttgaagttggcgtccatattgca
gacgtgtcacatttcgttaaaccgaacaatgccatggatctggaggctagcgtccgtgga
acgacagtctacctggtcgacaagcgtattgacatgcttccgcatcttctcggcacggat
ctctgctctctcaagccgtatgttgagcgctacgccttttcagtcctctgggagatgact
ccgaacgctgaagtcgtgtctgctgaattcaccaagtccgttattcgctcgcgagaggcc
ttcagctacgaacaggcacaaatgcgcatcgacgacccttcgcaaaatgatgagctgact
cagagcatgcgcaccctactccgtctgtcgaaaattctccgtcagaagcgaatggatgca
ggagcgctgaatcttgcctcaccggaagttcgaatcgagacggacagcgacgaagttggc
gacccgctcacggatgtcaagacgaaggcaatgcttgcaaccaacagtctagttgaagag
ttcatgcttcacgccaacatcactgtggcggcgaaaatctacgatagcttttcccagacc
gctttgctacgtcgacacgccacacctccgccacagaattttgaggagctcatcaatcag
ctctcgaagaaacgcaatctggaactcgacgtttcgagctcgcgggccctcgctgactcg
cttgacagatgcgtcgatccagagaacccattctttaacactctggtccgtatccttgcc
accaggtgtatgacatctgcggaatacttttgtgcgggtgcacatgccgagtccgaattt
cgccattacggtctggcctcccccatctacacacattttacctctcctatcagacggtat
gcggatttgctcgtccaccgacagctcgcagccgcgattggatacgaaggcgaagacggc
cgggcgcaggttgaaggtgtcatgacacgcaacaggctcgaagacatctgccggaatatc
aactatcggcatcggaatgctcaattcgccggccgtgctagcatcgagtactacgttgga
caggcgctcaaggctcgtggggaaaagatggcggccgacggcgttgatgcgggtattgag
gaagaaggatacgtcatgcgcgtctttgagaacggcgtggttgtcttcgttccccgattt
ggaattgagggcgttgtccgcctggaggatttcgtgctttctggcgagtcggcagtccgg
tccgtcgaggaaaggcgggagctgctggtgcgacgtgaaagcgatttcgacggcgaggag
tacacgctccgtgtttctgagaagggacatcctgagaaggaacgtggcgttaccgtcgag
ctcttccagcgagtcaaggtgaatgtcagctctgtgaaggaagaaggaggccgtggagct
ggaaagagacgggtgcggatattgattctgggggccgggaactaa
DBGET
integrated database retrieval system
