KEGG   Aspergillus fischeri: NFIA_104070
Entry
NFIA_104070       CDS       T01070                                 
Name
(RefSeq) WD repeat-containing protein
  KO
K12880  THO complex subunit 3
Organism
nfi  Aspergillus fischeri
Pathway
nfi03013  Nucleocytoplasmic transport
nfi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:nfi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    NFIA_104070
  09122 Translation
   03013 Nucleocytoplasmic transport
    NFIA_104070
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:nfi03019]
    NFIA_104070
   03041 Spliceosome [BR:nfi03041]
    NFIA_104070
Messenger RNA biogenesis [BR:nfi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     NFIA_104070
Spliceosome [BR:nfi03041]
 Complex C
  Other components
   EJC/TREX
    NFIA_104070
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    NFIA_104070
SSDB
Motif
Pfam: Beta-prop_THOC3 WD40 Beta-prop_WDR5 Beta-prop_EML_2 WD40_Prp19 Beta-prop_WDR3_1st WD40_WDHD1_1st WD40_CDC20-Fz ANAPC4_WD40 Beta-prop_WDR3_2nd WD40_Gbeta Beta-prop_WDR75_1st WDR55 Beta-prop_TEP1_2nd Beta-prop_Aladin Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_RIG_2nd Beta-prop_IFT122_1st Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR90_POC16_2nd Cytochrom_D1 WDR90_beta-prop_4th Beta-prop_EIPR1 Beta-prop_SCAP Beta-prop_WDR19_1st WD40_MABP1-WDR62_2nd Tricorn_2nd Beta-prop_NOL10_N Beta-prop_EML eIF2A WD40_MABP1-WDR62_1st Beta-prop_ACSF4 Beta-prop_HPS5 Beta-prop_WDR35_TULP_N Beta-prop_IFT140_1st Beta-prop_TEP1_C WD40_RFWD3 Beta-prop_WDR36-Utp21_1st Beta-prop_WDR41 KNTC1_N PALB2_WD40 Beta-prop_SPT8
Other DBs
NCBI-GeneID: 4594134
NCBI-ProteinID: XP_001266816
UniProt: A1CWB7
LinkDB
Position
Unknown
AA seq 376 aa
MAPPPRRNLLPKERFAFAFGSLKTQSYHDPIARGPGSHTIRTIAWNPTGQLIATGSADRT
LRIWNPERPAVKYSTELRGHSAGIEKVLFNPVKDSELASCSTDGTVRFWDVRSKTCVSRL
DVGGEAFTMSWSADGRVLMVGRKDDTLFPISIESPSSSHILTDGVTNFPPTSSTTSKEGT
TTYTALESHPQPVQTNATTFSHHIPTPTSPDLHLFATTGEGTVKIMSYPSFDVLHTLHAH
TSACLSIALAPTGRYLAVGGSDALISLWDTTDWICRRTVSSNNGGAVRGVSWSFDGRFVC
GACDEVGCGGNGLEIFHAETGESVYTVPTGGSSASGIPTVAWHPSRYWLAYSTTADGPGS
AGAGGLKIVGAAGGSL
NT seq 1131 nt   +upstreamnt  +downstreamnt
atggctcctccaccacgacggaatctcctgccaaaggagcgatttgcattcgcgttcggt
agcctcaagactcaaagctatcatgaccccattgcaaggggtcccgggtcccacactatc
cgcacgatagcgtggaatcctaccgggcagctcattgctacaggctcggccgatcgaacc
cttcgcatctggaaccccgagcgcccggcagtcaaatactcgaccgaactgcgcggccat
tccgcgggcatcgagaaagtgttatttaacccggttaaagactcggagctggcgagttgc
tcgacggatggtaccgtcaggttttgggatgtgcgatcgaagacttgtgtaagccgtctc
gatgtcggcggagaggcattcacaatgtcctggtcggcggatgggagggtccttatggtg
ggaagaaaggacgacaccttgttccccatttcgatagaatcgccctcttcatcacatatt
ctgacagacggcgtcaccaatttccccccaacatcatctacgacttcaaaagaaggaacg
acaacctacaccgcactagaatcccatccacagcccgtccagaccaacgcaacgaccttc
tcccaccacatccccacccccacctctcccgacttgcatctcttcgccacaacaggcgaa
ggcaccgtcaaaatcatgtcgtacccgtccttcgacgtcctgcacacccttcacgcacac
acatccgcatgtctctctatagccctcgcgcctacaggccggtacctcgccgtcggcggc
agcgacgctctgatctcgctctgggatacaacggactggatctgccggcgcacagtctcg
agtaacaacgggggtgctgtccgcggcgtaagctggagcttcgatgggcgtttcgtctgc
ggcgcctgcgacgaggtaggctgcggcgggaacggcctggagattttccatgctgaaaca
ggggagagcgtctacacggttcctacgggcggcagcagtgcatctggtataccgactgtt
gcatggcatccctcgcgttactggcttgcatattcgaccacggctgacgggcctggaagt
gcgggtgccggagggctgaagattgtcggtgccgctggtggaagcttatga

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